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limma 2x2 factorial contrast.matrix
limma
weaver
limma
weaver
14.0 years ago
Ben Nota
▴ 10
0
votes
3
replies
967
views
interaction term contrast in Weaver mutant example of LIMMA manual
limma
weaver
limma
weaver
updated 14.6 years ago by
James W. MacDonald
65k • written 14.6 years ago by
Erika Melissari
▴ 250
0
votes
0
replies
1.2k
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subscript out of bounds halting error when Sweaving with weaver And GOstats' HyperGTest
GO
weaver
GO
weaver
15.6 years ago
Elliot Kleiman
▴ 150
0
votes
1
reply
2.0k
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Limma user’s guide example data sets
Microarray
limma
limmaGUI
weaver
Microarray
limma
limmaGUI
weaver
updated 15.9 years ago by
Wang, Jixin
▴ 130 • written 15.9 years ago by
Keith Satterley
▴ 450
0
votes
0
replies
968
views
Limma user’s guide example data sets
Microarray
limma
weaver
Microarray
limma
weaver
15.9 years ago
Wang, Jixin
▴ 130
0
votes
0
replies
885
views
Limma - using both array and spot weights in lmFit
Genetics
limma
weaver
Genetics
limma
weaver
17.0 years ago
Gordon Smyth
50k
0
votes
0
replies
817
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Advice on how to compare two different sources on cDNA
limma
weaver
limma
weaver
17.3 years ago
Marcelo Laia
▴ 450
0
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1
reply
797
views
limma example Weaver Data
limma
weaver
limma
weaver
18.9 years ago
Gordon Smyth
50k
0
votes
3
replies
1.3k
views
limma example Weaver Data
limma
weaver
limma
weaver
updated 18.9 years ago by
Gordon Smyth
50k • written 18.9 years ago by
Wenbin Liu
▴ 100
0
votes
0
replies
952
views
Controls and duplicate correlation
limma
weaver
limma
weaver
19.0 years ago
lepalmer@notes.cc.sunysb.edu
▴ 40
0
votes
3
replies
1.2k
views
design in mixed ref and dye-swap experiment
limma
weaver
limma
weaver
updated 19.1 years ago by
Gordon Smyth
50k • written 19.1 years ago by
Silvano Piazza
▴ 50
0
votes
0
replies
2.4k
views
limma design matrix
GO
limma
PROcess
weaver
GO
limma
PROcess
weaver
20.2 years ago
Gordon Smyth
50k
0
votes
2
replies
1.0k
views
limma missing files
weaver
weaver
updated 21.0 years ago by
Gordon Smyth
50k • written 21.0 years ago by
Dick Beyer
★ 1.4k
13 results • Page
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Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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