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limma example Weaver Data
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updated 18.9 years ago by 50k • written 18.9 years ago by ▴ 100
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interaction term contrast in Weaver mutant example of LIMMA manual
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updated 14.6 years ago by 65k • written 14.6 years ago by ▴ 250
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design in mixed ref and dye-swap experiment
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updated 19.1 years ago by 50k • written 19.1 years ago by ▴ 50
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limma missing files
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updated 21.0 years ago by 50k • written 21.0 years ago by ★ 1.4k
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limma example Weaver Data
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18.9 years ago Gordon Smyth 50k
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Limma user’s guide example data sets
Microarray limma limmaGUI weaver Microarray limma limmaGUI weaver
updated 15.9 years ago by ▴ 130 • written 15.9 years ago by ▴ 450
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subscript out of bounds halting error when Sweaving with weaver And GOstats' HyperGTest
GO weaver GO weaver
15.5 years ago Elliot Kleiman ▴ 150
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limma 2x2 factorial contrast.matrix
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14.0 years ago Ben Nota ▴ 10
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limma design matrix
GO limma PROcess weaver GO limma PROcess weaver
20.1 years ago Gordon Smyth 50k
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Controls and duplicate correlation
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18.9 years ago lepalmer@notes.cc.sunysb.edu ▴ 40
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Advice on how to compare two different sources on cDNA
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17.2 years ago Marcelo Laia ▴ 450
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Limma - using both array and spot weights in lmFit
Genetics limma weaver Genetics limma weaver
17.0 years ago Gordon Smyth 50k
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Limma user’s guide example data sets
Microarray limma weaver Microarray limma weaver
15.9 years ago Wang, Jixin ▴ 130
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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Scholar to Peter Hickey ▴ 740
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