Showing : weaver • reset
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design in mixed ref and dye-swap experiment
limma weaver limma weaver
updated 19.1 years ago by 50k • written 19.1 years ago by ▴ 50
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limma missing files
weaver weaver
updated 21.0 years ago by 50k • written 21.0 years ago by ★ 1.4k
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limma design matrix
GO limma PROcess weaver GO limma PROcess weaver
20.2 years ago Gordon Smyth 50k
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Controls and duplicate correlation
limma weaver limma weaver
19.0 years ago lepalmer@notes.cc.sunysb.edu ▴ 40
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limma example Weaver Data
limma weaver limma weaver
updated 18.9 years ago by 50k • written 18.9 years ago by ▴ 100
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limma example Weaver Data
limma weaver limma weaver
18.9 years ago Gordon Smyth 50k
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Advice on how to compare two different sources on cDNA
limma weaver limma weaver
17.3 years ago Marcelo Laia ▴ 450
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Limma - using both array and spot weights in lmFit
Genetics limma weaver Genetics limma weaver
17.0 years ago Gordon Smyth 50k
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Limma user’s guide example data sets
Microarray limma weaver Microarray limma weaver
15.9 years ago Wang, Jixin ▴ 130
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Limma user’s guide example data sets
Microarray limma limmaGUI weaver Microarray limma limmaGUI weaver
updated 15.9 years ago by ▴ 130 • written 15.9 years ago by ▴ 450
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subscript out of bounds halting error when Sweaving with weaver And GOstats' HyperGTest
GO weaver GO weaver
15.6 years ago Elliot Kleiman ▴ 150
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interaction term contrast in Weaver mutant example of LIMMA manual
limma weaver limma weaver
updated 14.6 years ago by 65k • written 14.6 years ago by ▴ 250
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limma 2x2 factorial contrast.matrix
limma weaver limma weaver
14.0 years ago Ben Nota ▴ 10
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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
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C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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