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limma 2x2 factorial contrast.matrix
limma
weaver
limma
weaver
14.0 years ago
Ben Nota
▴ 10
0
votes
3
replies
966
views
interaction term contrast in Weaver mutant example of LIMMA manual
limma
weaver
limma
weaver
updated 14.6 years ago by
James W. MacDonald
65k • written 14.6 years ago by
Erika Melissari
▴ 250
0
votes
0
replies
1.2k
views
subscript out of bounds halting error when Sweaving with weaver And GOstats' HyperGTest
GO
weaver
GO
weaver
15.6 years ago
Elliot Kleiman
▴ 150
0
votes
1
reply
2.0k
views
Limma user’s guide example data sets
Microarray
limma
limmaGUI
weaver
Microarray
limma
limmaGUI
weaver
updated 15.9 years ago by
Wang, Jixin
▴ 130 • written 15.9 years ago by
Keith Satterley
▴ 450
0
votes
0
replies
968
views
Limma user’s guide example data sets
Microarray
limma
weaver
Microarray
limma
weaver
15.9 years ago
Wang, Jixin
▴ 130
0
votes
0
replies
885
views
Limma - using both array and spot weights in lmFit
Genetics
limma
weaver
Genetics
limma
weaver
17.0 years ago
Gordon Smyth
50k
0
votes
0
replies
817
views
Advice on how to compare two different sources on cDNA
limma
weaver
limma
weaver
17.3 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
797
views
limma example Weaver Data
limma
weaver
limma
weaver
18.9 years ago
Gordon Smyth
50k
0
votes
3
replies
1.3k
views
limma example Weaver Data
limma
weaver
limma
weaver
updated 18.9 years ago by
Gordon Smyth
50k • written 18.9 years ago by
Wenbin Liu
▴ 100
0
votes
0
replies
951
views
Controls and duplicate correlation
limma
weaver
limma
weaver
19.0 years ago
lepalmer@notes.cc.sunysb.edu
▴ 40
0
votes
3
replies
1.2k
views
design in mixed ref and dye-swap experiment
limma
weaver
limma
weaver
updated 19.1 years ago by
Gordon Smyth
50k • written 19.1 years ago by
Silvano Piazza
▴ 50
0
votes
0
replies
2.4k
views
limma design matrix
GO
limma
PROcess
weaver
GO
limma
PROcess
weaver
20.2 years ago
Gordon Smyth
50k
0
votes
2
replies
1.0k
views
limma missing files
weaver
weaver
updated 21.0 years ago by
Gordon Smyth
50k • written 21.0 years ago by
Dick Beyer
★ 1.4k
13 results • Page
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Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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