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limma example Weaver Data
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updated 18.9 years ago by 50k • written 18.9 years ago by ▴ 100
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interaction term contrast in Weaver mutant example of LIMMA manual
limma weaver limma weaver
updated 14.6 years ago by 65k • written 14.6 years ago by ▴ 250
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design in mixed ref and dye-swap experiment
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updated 19.1 years ago by 50k • written 19.1 years ago by ▴ 50
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limma missing files
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updated 21.0 years ago by 50k • written 21.0 years ago by ★ 1.4k
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limma example Weaver Data
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18.9 years ago Gordon Smyth 50k
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Limma user’s guide example data sets
Microarray limma limmaGUI weaver Microarray limma limmaGUI weaver
updated 15.9 years ago by ▴ 130 • written 15.9 years ago by ▴ 450
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subscript out of bounds halting error when Sweaving with weaver And GOstats' HyperGTest
GO weaver GO weaver
15.6 years ago Elliot Kleiman ▴ 150
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limma 2x2 factorial contrast.matrix
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14.0 years ago Ben Nota ▴ 10
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limma design matrix
GO limma PROcess weaver GO limma PROcess weaver
20.2 years ago Gordon Smyth 50k
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Controls and duplicate correlation
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18.9 years ago lepalmer@notes.cc.sunysb.edu ▴ 40
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Advice on how to compare two different sources on cDNA
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17.3 years ago Marcelo Laia ▴ 450
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Limma - using both array and spot weights in lmFit
Genetics limma weaver Genetics limma weaver
17.0 years ago Gordon Smyth 50k
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Limma user’s guide example data sets
Microarray limma weaver Microarray limma weaver
15.9 years ago Wang, Jixin ▴ 130
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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