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limma design matrix
GO
limma
PROcess
weaver
GO
limma
PROcess
weaver
20.1 years ago
Gordon Smyth
50k
0
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1
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2.0k
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Limma user’s guide example data sets
Microarray
limma
limmaGUI
weaver
Microarray
limma
limmaGUI
weaver
updated 15.8 years ago by
Wang, Jixin
▴ 130 • written 15.8 years ago by
Keith Satterley
▴ 450
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1.3k
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limma example Weaver Data
limma
weaver
limma
weaver
updated 18.8 years ago by
Gordon Smyth
50k • written 18.9 years ago by
Wenbin Liu
▴ 100
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subscript out of bounds halting error when Sweaving with weaver And GOstats' HyperGTest
GO
weaver
GO
weaver
15.5 years ago
Elliot Kleiman
▴ 150
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3
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1.2k
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design in mixed ref and dye-swap experiment
limma
weaver
limma
weaver
updated 19.0 years ago by
Gordon Smyth
50k • written 19.0 years ago by
Silvano Piazza
▴ 50
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limma 2x2 factorial contrast.matrix
limma
weaver
limma
weaver
13.9 years ago
Ben Nota
▴ 10
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2
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986
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limma missing files
weaver
weaver
updated 20.9 years ago by
Gordon Smyth
50k • written 20.9 years ago by
Dick Beyer
★ 1.4k
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3
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953
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interaction term contrast in Weaver mutant example of LIMMA manual
limma
weaver
limma
weaver
updated 14.6 years ago by
James W. MacDonald
65k • written 14.6 years ago by
Erika Melissari
▴ 250
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0
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951
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Limma user’s guide example data sets
Microarray
limma
weaver
Microarray
limma
weaver
15.8 years ago
Wang, Jixin
▴ 130
0
votes
0
replies
939
views
Controls and duplicate correlation
limma
weaver
limma
weaver
18.9 years ago
lepalmer@notes.cc.sunysb.edu
▴ 40
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873
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Limma - using both array and spot weights in lmFit
Genetics
limma
weaver
Genetics
limma
weaver
16.9 years ago
Gordon Smyth
50k
0
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0
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802
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Advice on how to compare two different sources on cDNA
limma
weaver
limma
weaver
17.2 years ago
Marcelo Laia
▴ 450
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784
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limma example Weaver Data
limma
weaver
limma
weaver
18.8 years ago
Gordon Smyth
50k
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Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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