Bioconductor Webbioc

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webbioc webbioc

20.4 years ago Ron Ophir ▴ 80

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webbioc webbioc

20.4 years ago Fujito Atsuya ▴ 20

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webbioc DOSE webbioc DOSE

20.4 years ago Colin A. Smith ▴ 220

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webbioc webbioc

20.4 years ago Colin A. Smith ▴ 220

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webbioc webbioc

20.4 years ago Colin A. Smith ▴ 220

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Genetics multtest webbioc Genetics multtest webbioc

20.4 years ago Jose Duarte ▴ 100

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811

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webbioc cycle webbioc cycle

20.4 years ago Colin A. Smith ▴ 220

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Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim

updated 19.9 years ago by Wolfgang Huber ★ 13k • written 19.9 years ago by A.J. Rossini ▴ 810

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882

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webbioc webbioc

19.8 years ago Phguardiol@aol.com ▴ 720

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993

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webbioc webbioc

updated 19.2 years ago by Colin A. Smith ▴ 220 • written 19.3 years ago by Jacob Michaelson ▴ 320

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webbioc webbioc

updated 18.1 years ago by Seth Falcon ★ 7.4k • written 18.1 years ago by Narendra Kaushik ▴ 150

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Microarray cdf probe multtest affy webbioc Microarray cdf probe multtest affy webbioc

updated 17.2 years ago by Nianhua Li ▴ 870 • written 17.2 years ago by jane janes ▴ 20

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Microarray webbioc Microarray webbioc

16.9 years ago jane janes ▴ 20

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Annotation webbioc Annotation webbioc

16.9 years ago Dave Campbell ▴ 10

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webbioc webbioc

updated 16.3 years ago by Kasper Daniel Hansen ★ 6.5k • written 16.3 years ago by Ron ▴ 40

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Preprocessing multtest webbioc Preprocessing multtest webbioc

16.0 years ago Balasubramanian Ganesan ▴ 70

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webbioc qvalue webbioc qvalue

updated 15.6 years ago by ALok ▴ 170 • written 15.6 years ago by Amy Johnson ▴ 40

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Comment: DESeq2 setting significant p-value by Michael Love 41k

It does not resort. Also the dataset and results will have the same row names from object creation throughout the analysis.

Comment: Input Question for deseq.r by ATpoint ★ 4.0k

It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…

Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k

In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …

Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k

```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…

Comment: DESeq2 setting significant p-value by Dev • 0

after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …

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Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

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