Biostar Wes

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751

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CNV WGS WES

updated 4.9 years ago by Haiying.Kong ▴ 110 • written 4.9 years ago by Bogdan ▴ 640

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1.9k

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gdc tcga wes gdc data

updated 4.2 years ago by Sean Davis 21k • written 4.2 years ago by Biologist ▴ 90

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712

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exome dnaseq WES

6.0 years ago arvand.akbari • 0

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558

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WES

5.6 years ago Haiying.Kong ▴ 110

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218

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exomeCopy CNV WES

14 months ago Cheng • 0

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Answer: I got error message about DESeqDataSetFromMatrix by swbarnes2 ★ 1.1k

Did you do `library(DESeq2)` first? That's the error you get when the software has no idea what function you are referring to, beca…

Comment: miRNA differential expression analysis - treat as transcript level? by Michael Love 37k

This is very low and I think you can just use regular count-based methods safely. If you look at the ~3 features above 1 those are probably…

Comment: LogFC: how do you determine the cutoff for differentially expressed genes? by OE • 0

Hi Aaron, I have been performing some Diffrential Methylation Analysis and found some logFC values really closer to 0 ( from - 0.07 to 0.1…

Comment: Macbook M1 install genefilter failed by matt.broerman • 0

This error is similar to this one: https://stackoverflow.com/questions/66817276/how-to-install-rcpparmadillo-on-apple-silicon-m1-macs So i…

Comment: miRNA differential expression analysis - treat as transcript level? by BG • 0

Hi, attached is the plot for the inferential variance (code according to the fishpond vignette). How does this look to you? The first plot …

Votes

C: Converting numeric variables to factors in DESeq metadata

Comment: miRNA differential expression analysis - treat as transcript level?

At least one covariate is confounded with batch! Please remove confounded covariates and rerun ComBat

Comment: RSEM - tximport; where is effective_length information used? Implications for sc

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Teacher to Michael Love 37k