Bioconductor Windows

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bioconductor R windows diffbind

updated 6.6 years ago by Gord Brown ▴ 650 • written 6.6 years ago by jorrenkuster • 0

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Install RMySQL Windows

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by Panagiotis Moulos ▴ 30

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HiTC IRanges windows debian

updated 5.8 years ago by Nicolas Servant ▴ 260 • written 5.8 years ago by René Wiegandt • 0

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software error BigWig import windows

3.7 years ago lsilva.m • 0

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software error R windows

updated 5.1 years ago by Mike Smith ★ 6.2k • written 5.1 years ago by a • 0

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pthread windows tokay2

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by jiaxing.lin • 0

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package compilation error dll windows

8.2 years ago Miguel Juliá • 0

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deseq2 bioconductor windows xml installation

updated 3.4 years ago by Michael Love 41k • written 3.4 years ago by sarah3 • 0

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rhdf5 windows

8.1 years ago cyang227 • 0

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import.bw rtracklayer Windows http

2.0 years ago sla • 0

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windows variantannotation makevars.win

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by simon ▴ 10

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483

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software error aspli plotgenomicregions windows

3.6 years ago joanmarquez21 • 0

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R h5ls windows linux

updated 6.1 years ago by Mike Smith ★ 6.2k • written 6.2 years ago by maxime.fortin • 0

13 results • Page 1 of 1

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Comment: Agilent Microarray Gene Oncology analysis gone wrong by SamGG ▴ 320

Gordon said to let coef to its default value: topTable(fit, n=20)

Comment: Can the limma package be applied to Log2 RUV-normalized data? by Shaimaa Gamal • 0

Hi Gordon, On what basis we can determine whether the dataset is large or not? I am working on a dataset of 515 samples and 5440 genes. I w…

Comment: Agilent Microarray Gene Oncology analysis gone wrong by samagbeyimodupe • 0

Thank you for the quick response. i ran the codes again and removed all the other arguments for eBayes except for fit. I ran the line of co…

Comment: Correct the batch effect in methylation analysis in R by Gordon Smyth 49k

> Is it okay to apply removeBatchEffect before a limma analysis(limma linear model)? No, you should not apply any batch correction before …

Comment: Correct the batch effect in methylation analysis in R by kyj2226 • 0

Thank you for your response Gordon :) I've already run the code below, just add batch to the limma linear model design <- model.matri…

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Answer: Correct the batch effect in methylation analysis in R

Answer: enrichGOgradient color change

Answer: Filter genes by expression for voomLmFit

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