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Showing :
workflows
•
reset
6
votes
1
reply
3.9k
views
Tutorial:
Orchestrating a small, parallel, RNA-seq pre-processing workflow using R
rnaseq
biocparallel
workflows
sra
Tutorial
8.8 years ago
Sean Davis
21k
5
votes
1
reply
3.3k
views
News:
Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication
workflows
benchmark
teaching
News
updated 8.1 years ago by
thomas.ingraham
▴ 10 • written 8.1 years ago by
Wolfgang Huber
★ 13k
3
votes
2
replies
3.1k
views
Sparse matrices in Bioconductor objects for single-cell analyses
scater
simpleSingleCell
workflows
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
sandmann.t
▴ 70
2
votes
5
replies
3.0k
views
Programs used in RNA-seq workflow
deseq2
bioconductor
workflows
differential gene expression
rnaseqgene
8.1 years ago
cirisarri95
• 0
1
vote
2
replies
2.8k
views
Tutorial for RNA-Seq Data Analysis
rnaseq
data analysis
tutorial
workflows
differential gene expression
updated 7.1 years ago by
Aaron Lun
★ 28k • written 7.1 years ago by
Pranavathiyani G
• 0
0
votes
1
reply
2.7k
views
workflowInstall is not working
workflowinstall
workflows
6.4 years ago
mckf11111
• 0
3
votes
7
replies
2.5k
views
Workflows in BioC 3.2
workflows
installation
biocinstaller
updated 8.3 years ago by
angela.oliveira.pisco
• 0 • written 8.5 years ago by
davide risso
▴ 950
3
votes
0
replies
2.2k
views
News:
BMC Source Code for Biology and Medicine: R/Bioconductor Workflows Section is calling for papers
workflows
publish
News
8.6 years ago
Levi Waldron
★ 1.1k
2
votes
5
replies
2.1k
views
Workflow highthroughputassays can't install properly
workflows
flowcore
flowstats
flowworkspace
7.2 years ago
kristoffer.haurum
• 0
0
votes
0
replies
2.0k
views
Job:
Computational biologist / Bioinformatician – High-throughput screening
rnai
high-throughput screening
workflows
Job
8.8 years ago
e.schmidt
▴ 10
0
votes
4
replies
1.8k
views
workflow.R in BioC 3.3
workflows
rnaseqgene
updated 7.9 years ago by
j.baldauf
• 0 • written 7.9 years ago by
yasmin.friedmann
• 0
1
vote
2
replies
1.7k
views
Installing workflows with bioconductor v3.0
software error
workflows
updated 9.4 years ago by
Dan Tenenbaum
★ 8.2k • written 9.4 years ago by
tiffanie.moss
• 0
0
votes
0
replies
1.6k
views
Job:
Services/Outreach orientend bioinformatics positions at EMBL - Heidelberg
EMBL
services
workflows
training
Job
9.2 years ago
Wolfgang Huber
★ 13k
1
vote
4
replies
1.5k
views
Does BiocWorkflowTools package generate F1000Reseach/Bioconductor-stype PDF at once?
workflows
biocworkflowtools
bioconductor
5.9 years ago
Koki
▴ 10
0
votes
2
replies
1.3k
views
Problem with Annotating Genomic Variant
workflows
vcf
8.9 years ago
merella.stefania
• 0
1
vote
2
replies
1.3k
views
Workflows in BioC 3.3
workflows
workflowinstall
3.3
8.0 years ago
Axel Klenk
★ 1.0k
0
votes
1
reply
1.2k
views
help installing bioconductor workflows
workflows
biocinstaller
error
8.0 years ago
rocknrollscience
• 0
0
votes
0
replies
1.1k
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
6.0 years ago
shepherl
3.8k
0
votes
1
reply
1.0k
views
Problem installing Bioc Workflows
rnaseq
workflows
bioconductor
7.9 years ago
Hadi Gharibi
• 0
0
votes
1
reply
849
views
Unusual graph for Identifying HVGs from the normalized log-expression
workflows
simplesinglecell
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
es.azadian
• 0
0
votes
0
replies
838
views
News:
Workflows now building on Bioc3.6
workflows
News
6.6 years ago
shepherl
3.8k
21 results • Page
1 of 1
Recent ...
Replies
Comment: PCA plot suggestions
by
JKim
• 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
James W. MacDonald
65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Votes
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
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JKim
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Gordon Smyth
50k
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Chris
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Jonathan
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