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Showing :
workflows
•
reset
6
votes
1
reply
3.9k
views
Tutorial:
Orchestrating a small, parallel, RNA-seq pre-processing workflow using R
rnaseq
biocparallel
workflows
sra
Tutorial
8.8 years ago
Sean Davis
21k
5
votes
1
reply
3.3k
views
News:
Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication
workflows
benchmark
teaching
News
updated 8.0 years ago by
thomas.ingraham
▴ 10 • written 8.1 years ago by
Wolfgang Huber
★ 13k
3
votes
2
replies
3.1k
views
Sparse matrices in Bioconductor objects for single-cell analyses
scater
simpleSingleCell
workflows
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
sandmann.t
▴ 70
3
votes
0
replies
2.2k
views
News:
BMC Source Code for Biology and Medicine: R/Bioconductor Workflows Section is calling for papers
workflows
publish
News
8.6 years ago
Levi Waldron
★ 1.1k
3
votes
7
replies
2.5k
views
Workflows in BioC 3.2
workflows
installation
biocinstaller
updated 8.2 years ago by
angela.oliveira.pisco
• 0 • written 8.5 years ago by
davide risso
▴ 950
2
votes
5
replies
2.1k
views
Workflow highthroughputassays can't install properly
workflows
flowcore
flowstats
flowworkspace
7.2 years ago
kristoffer.haurum
• 0
2
votes
5
replies
3.0k
views
Programs used in RNA-seq workflow
deseq2
bioconductor
workflows
differential gene expression
rnaseqgene
8.0 years ago
cirisarri95
• 0
1
vote
2
replies
1.7k
views
Installing workflows with bioconductor v3.0
software error
workflows
updated 9.4 years ago by
Dan Tenenbaum
★ 8.2k • written 9.4 years ago by
tiffanie.moss
• 0
1
vote
2
replies
1.3k
views
Workflows in BioC 3.3
workflows
workflowinstall
3.3
7.9 years ago
Axel Klenk
★ 1.0k
1
vote
2
replies
2.8k
views
Tutorial for RNA-Seq Data Analysis
rnaseq
data analysis
tutorial
workflows
differential gene expression
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
Pranavathiyani G
• 0
1
vote
4
replies
1.4k
views
Does BiocWorkflowTools package generate F1000Reseach/Bioconductor-stype PDF at once?
workflows
biocworkflowtools
bioconductor
5.9 years ago
Koki
▴ 10
0
votes
4
replies
1.8k
views
workflow.R in BioC 3.3
workflows
rnaseqgene
updated 7.9 years ago by
j.baldauf
• 0 • written 7.9 years ago by
yasmin.friedmann
• 0
0
votes
1
reply
1.0k
views
Problem installing Bioc Workflows
rnaseq
workflows
bioconductor
7.9 years ago
Hadi Gharibi
• 0
0
votes
2
replies
1.3k
views
Problem with Annotating Genomic Variant
workflows
vcf
8.8 years ago
merella.stefania
• 0
0
votes
1
reply
845
views
Unusual graph for Identifying HVGs from the normalized log-expression
workflows
simplesinglecell
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
es.azadian
• 0
0
votes
0
replies
1.6k
views
Job:
Services/Outreach orientend bioinformatics positions at EMBL - Heidelberg
EMBL
services
workflows
training
Job
9.1 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
833
views
News:
Workflows now building on Bioc3.6
workflows
News
6.6 years ago
shepherl
3.8k
0
votes
1
reply
2.6k
views
workflowInstall is not working
workflowinstall
workflows
6.4 years ago
mckf11111
• 0
0
votes
0
replies
2.0k
views
Job:
Computational biologist / Bioinformatician – High-throughput screening
rnai
high-throughput screening
workflows
Job
8.8 years ago
e.schmidt
▴ 10
0
votes
1
reply
1.2k
views
help installing bioconductor workflows
workflows
biocinstaller
error
7.9 years ago
rocknrollscience
• 0
0
votes
0
replies
1.1k
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
6.0 years ago
shepherl
3.8k
21 results • Page
1 of 1
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Replies
Comment: significant difference of p-values with dream() after updating VariancePartition
by
gabriel.hoffman
▴ 100
See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…
Comment: A ComBat-seq issue: the covariates are confounded
by
W. Evan Johnson
▴ 850
This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…
Answer: Different number of exons in reference genome affects DEXSeq analysis
by
Alejandro Reyes
★ 1.9k
Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…
Answer: Adding columns to DEXSeqResults object
by
Alejandro Reyes
★ 1.9k
I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…
Answer: rlog transformation
by
Michael Love
41k
It is dependent on the other samples in the dataset.
Votes
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
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