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Showing :
workflows
•
reset
6
votes
1
reply
3.8k
views
Tutorial:
Orchestrating a small, parallel, RNA-seq pre-processing workflow using R
rnaseq
biocparallel
workflows
sra
Tutorial
8.7 years ago
Sean Davis
21k
5
votes
1
reply
3.3k
views
News:
Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication
workflows
benchmark
teaching
News
updated 8.0 years ago by
thomas.ingraham
▴ 10 • written 8.0 years ago by
Wolfgang Huber
★ 13k
3
votes
2
replies
3.1k
views
Sparse matrices in Bioconductor objects for single-cell analyses
scater
simpleSingleCell
workflows
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
sandmann.t
▴ 70
2
votes
5
replies
3.0k
views
Programs used in RNA-seq workflow
deseq2
bioconductor
workflows
differential gene expression
rnaseqgene
8.0 years ago
cirisarri95
• 0
1
vote
2
replies
2.7k
views
Tutorial for RNA-Seq Data Analysis
rnaseq
data analysis
tutorial
workflows
differential gene expression
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
Pranavathiyani G
• 0
0
votes
1
reply
2.6k
views
workflowInstall is not working
workflowinstall
workflows
6.4 years ago
mckf11111
• 0
3
votes
7
replies
2.4k
views
Workflows in BioC 3.2
workflows
installation
biocinstaller
updated 8.2 years ago by
angela.oliveira.pisco
• 0 • written 8.4 years ago by
davide risso
▴ 950
3
votes
0
replies
2.2k
views
News:
BMC Source Code for Biology and Medicine: R/Bioconductor Workflows Section is calling for papers
workflows
publish
News
8.6 years ago
Levi Waldron
★ 1.1k
2
votes
5
replies
2.0k
views
Workflow highthroughputassays can't install properly
workflows
flowcore
flowstats
flowworkspace
7.1 years ago
kristoffer.haurum
• 0
0
votes
0
replies
2.0k
views
Job:
Computational biologist / Bioinformatician – High-throughput screening
rnai
high-throughput screening
workflows
Job
8.7 years ago
e.schmidt
▴ 10
0
votes
4
replies
1.8k
views
workflow.R in BioC 3.3
workflows
rnaseqgene
updated 7.8 years ago by
j.baldauf
• 0 • written 7.8 years ago by
yasmin.friedmann
• 0
1
vote
2
replies
1.7k
views
Installing workflows with bioconductor v3.0
software error
workflows
updated 9.3 years ago by
Dan Tenenbaum
★ 8.2k • written 9.3 years ago by
tiffanie.moss
• 0
0
votes
0
replies
1.6k
views
Job:
Services/Outreach orientend bioinformatics positions at EMBL - Heidelberg
EMBL
services
workflows
training
Job
9.1 years ago
Wolfgang Huber
★ 13k
1
vote
4
replies
1.4k
views
Does BiocWorkflowTools package generate F1000Reseach/Bioconductor-stype PDF at once?
workflows
biocworkflowtools
bioconductor
5.8 years ago
Koki
▴ 10
0
votes
2
replies
1.3k
views
Problem with Annotating Genomic Variant
workflows
vcf
8.8 years ago
merella.stefania
• 0
1
vote
2
replies
1.2k
views
Workflows in BioC 3.3
workflows
workflowinstall
3.3
7.9 years ago
Axel Klenk
▴ 990
0
votes
1
reply
1.2k
views
help installing bioconductor workflows
workflows
biocinstaller
error
7.9 years ago
rocknrollscience
• 0
0
votes
0
replies
1.0k
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
5.9 years ago
shepherl
3.8k
0
votes
1
reply
1.0k
views
Problem installing Bioc Workflows
rnaseq
workflows
bioconductor
7.8 years ago
Hadi Gharibi
• 0
0
votes
1
reply
828
views
Unusual graph for Identifying HVGs from the normalized log-expression
workflows
simplesinglecell
updated 5.5 years ago by
Aaron Lun
★ 28k • written 5.5 years ago by
es.azadian
• 0
0
votes
0
replies
821
views
News:
Workflows now building on Bioc3.6
workflows
News
6.5 years ago
shepherl
3.8k
21 results • Page
1 of 1
Recent ...
Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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James W. MacDonald
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Pierre Lindenbaum
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Gordon Smyth
50k
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