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Showing :
workflows
•
reset
6
votes
1
reply
3.8k
views
Tutorial:
Orchestrating a small, parallel, RNA-seq pre-processing workflow using R
rnaseq
biocparallel
workflows
sra
Tutorial
8.7 years ago
Sean Davis
21k
5
votes
1
reply
3.3k
views
News:
Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication
workflows
benchmark
teaching
News
updated 8.0 years ago by
thomas.ingraham
▴ 10 • written 8.0 years ago by
Wolfgang Huber
★ 13k
3
votes
2
replies
3.1k
views
Sparse matrices in Bioconductor objects for single-cell analyses
scater
simpleSingleCell
workflows
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
sandmann.t
▴ 70
2
votes
5
replies
3.0k
views
Programs used in RNA-seq workflow
deseq2
bioconductor
workflows
differential gene expression
rnaseqgene
8.0 years ago
cirisarri95
• 0
1
vote
2
replies
2.7k
views
Tutorial for RNA-Seq Data Analysis
rnaseq
data analysis
tutorial
workflows
differential gene expression
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
Pranavathiyani G
• 0
0
votes
1
reply
2.6k
views
workflowInstall is not working
workflowinstall
workflows
6.4 years ago
mckf11111
• 0
3
votes
7
replies
2.4k
views
Workflows in BioC 3.2
workflows
installation
biocinstaller
updated 8.2 years ago by
angela.oliveira.pisco
• 0 • written 8.4 years ago by
davide risso
▴ 950
3
votes
0
replies
2.2k
views
News:
BMC Source Code for Biology and Medicine: R/Bioconductor Workflows Section is calling for papers
workflows
publish
News
8.6 years ago
Levi Waldron
★ 1.1k
2
votes
5
replies
2.1k
views
Workflow highthroughputassays can't install properly
workflows
flowcore
flowstats
flowworkspace
7.1 years ago
kristoffer.haurum
• 0
0
votes
0
replies
2.0k
views
Job:
Computational biologist / Bioinformatician – High-throughput screening
rnai
high-throughput screening
workflows
Job
8.7 years ago
e.schmidt
▴ 10
0
votes
4
replies
1.8k
views
workflow.R in BioC 3.3
workflows
rnaseqgene
updated 7.8 years ago by
j.baldauf
• 0 • written 7.8 years ago by
yasmin.friedmann
• 0
1
vote
2
replies
1.7k
views
Installing workflows with bioconductor v3.0
software error
workflows
updated 9.3 years ago by
Dan Tenenbaum
★ 8.2k • written 9.3 years ago by
tiffanie.moss
• 0
0
votes
0
replies
1.6k
views
Job:
Services/Outreach orientend bioinformatics positions at EMBL - Heidelberg
EMBL
services
workflows
training
Job
9.1 years ago
Wolfgang Huber
★ 13k
1
vote
4
replies
1.4k
views
Does BiocWorkflowTools package generate F1000Reseach/Bioconductor-stype PDF at once?
workflows
biocworkflowtools
bioconductor
5.8 years ago
Koki
▴ 10
0
votes
2
replies
1.3k
views
Problem with Annotating Genomic Variant
workflows
vcf
8.8 years ago
merella.stefania
• 0
1
vote
2
replies
1.2k
views
Workflows in BioC 3.3
workflows
workflowinstall
3.3
7.9 years ago
Axel Klenk
▴ 990
0
votes
1
reply
1.2k
views
help installing bioconductor workflows
workflows
biocinstaller
error
7.9 years ago
rocknrollscience
• 0
0
votes
0
replies
1.0k
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
5.9 years ago
shepherl
3.8k
0
votes
1
reply
1.0k
views
Problem installing Bioc Workflows
rnaseq
workflows
bioconductor
7.8 years ago
Hadi Gharibi
• 0
0
votes
1
reply
829
views
Unusual graph for Identifying HVGs from the normalized log-expression
workflows
simplesinglecell
updated 5.5 years ago by
Aaron Lun
★ 28k • written 5.5 years ago by
es.azadian
• 0
0
votes
0
replies
823
views
News:
Workflows now building on Bioc3.6
workflows
News
6.5 years ago
shepherl
3.8k
21 results • Page
1 of 1
Recent ...
Replies
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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