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xml
•
reset
8
votes
20
replies
5.5k
views
Issue when import genomic features from the file :Error in parseURI("") : cannot parse URI (issue resolved)
genomicfeatures
xml
libxml2
7.1 years ago
JunLVI
▴ 40
1
vote
12
replies
3.1k
views
Rcytoscape Rstudio Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems
software error
rcytoscape
xml
updated 9.4 years ago by
drsuuzzz
• 0 • written 9.4 years ago by
alessandro brozzi
▴ 120
0
votes
6
replies
2.6k
views
not able to install geoquery package
microarrays
xml
RCurl
libxml2
libcurl
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
farahqureshi5
• 0
3
votes
6
replies
2.8k
views
function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress
xml
rcurl
http
EBI
updated 6.5 years ago by
Wolfgang Huber
★ 13k • written 6.5 years ago by
Bernd Klaus
▴ 610
2
votes
6
replies
3.3k
views
Fixing download.kegg, from pathview(), which returns empty xml
pathview
download.kegg()
xml
updated 8.5 years ago by
Luo Weijun
★ 1.6k • written 8.6 years ago by
lucmoitinho
• 0
1
vote
3
replies
1.4k
views
unable to install DESeq2 there is no package called XML
deseq2
bioconductor
windows
xml
installation
updated 3.7 years ago by
Michael Love
41k • written 3.7 years ago by
sarah3
• 0
0
votes
3
replies
1.3k
views
Can't install DESeq2 because of libxml
deseq2
libxml
xml
updated 2.8 years ago by
Michael Love
41k • written 2.8 years ago by
Fátima
• 0
2
votes
3
replies
3.3k
views
How to convert graphNEL object into Adjacency Matrix?
graph
kegggraph
xml
updated 6.9 years ago by
Robert Castelo
★ 3.1k • written 6.9 years ago by
urwaCFC
• 0
3
votes
2
replies
6.7k
views
errors when installing cummeRbund package
Install
cummerbund
Rcurl
xml
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
dnajuice
▴ 20
0
votes
2
replies
7.9k
views
Error with "library("GenomicFeatures")" - "there is no package called ‘XML’"
genomicfeatures
xml
loadnamespace
8.9 years ago
greg.mulhearn
• 0
0
votes
2
replies
1.1k
views
Issue with xml files downloaded with `pathview()`
pathview
kegg
xml
updated 4.7 years ago by
Luo Weijun
★ 1.6k • written 4.7 years ago by
anamaria
▴ 10
0
votes
1
reply
2.3k
views
"Error in readRDS" while trying to install XML package
xml
install
8.7 years ago
jason.harris
• 0
1
vote
1
reply
2.0k
views
uploading xml file in flowworkspace
flowworkspace
xml
R
flowjo
updated 4.4 years ago by
Abby Moore
• 0 • written 7.0 years ago by
Ekaterina Terskikh
▴ 10
0
votes
1
reply
1.2k
views
Accessing local installation of biomart results in "Unexpected format to the list of available marts"
mart
martconfigurator
biomaRt
xml
updated 3.3 years ago by
Mike Smith
★ 6.5k • written 3.3 years ago by
anhvo711
• 0
0
votes
1
reply
885
views
objNameToList() on some particular list of objects in parent frame
tkWidgets
xml
kegggraph
updated 6.9 years ago by
James W. MacDonald
65k • written 6.9 years ago by
urwaCFC
• 0
15 results • Page
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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