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xml
•
reset
8
votes
20
replies
5.5k
views
Issue when import genomic features from the file :Error in parseURI("") : cannot parse URI (issue resolved)
genomicfeatures
xml
libxml2
7.1 years ago
JunLVI
▴ 40
3
votes
2
replies
6.7k
views
errors when installing cummeRbund package
Install
cummerbund
Rcurl
xml
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
dnajuice
▴ 20
3
votes
6
replies
2.8k
views
function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress
xml
rcurl
http
EBI
updated 6.5 years ago by
Wolfgang Huber
★ 13k • written 6.5 years ago by
Bernd Klaus
▴ 610
2
votes
3
replies
3.3k
views
How to convert graphNEL object into Adjacency Matrix?
graph
kegggraph
xml
updated 6.9 years ago by
Robert Castelo
★ 3.1k • written 6.9 years ago by
urwaCFC
• 0
2
votes
6
replies
3.3k
views
Fixing download.kegg, from pathview(), which returns empty xml
pathview
download.kegg()
xml
updated 8.5 years ago by
Luo Weijun
★ 1.6k • written 8.6 years ago by
lucmoitinho
• 0
1
vote
1
reply
2.0k
views
uploading xml file in flowworkspace
flowworkspace
xml
R
flowjo
updated 4.4 years ago by
Abby Moore
• 0 • written 7.0 years ago by
Ekaterina Terskikh
▴ 10
1
vote
12
replies
3.1k
views
Rcytoscape Rstudio Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems
software error
rcytoscape
xml
updated 9.4 years ago by
drsuuzzz
• 0 • written 9.4 years ago by
alessandro brozzi
▴ 120
1
vote
3
replies
1.4k
views
unable to install DESeq2 there is no package called XML
deseq2
bioconductor
windows
xml
installation
updated 3.7 years ago by
Michael Love
41k • written 3.7 years ago by
sarah3
• 0
0
votes
1
reply
2.3k
views
"Error in readRDS" while trying to install XML package
xml
install
8.7 years ago
jason.harris
• 0
0
votes
1
reply
883
views
objNameToList() on some particular list of objects in parent frame
tkWidgets
xml
kegggraph
updated 6.9 years ago by
James W. MacDonald
65k • written 6.9 years ago by
urwaCFC
• 0
0
votes
2
replies
7.9k
views
Error with "library("GenomicFeatures")" - "there is no package called ‘XML’"
genomicfeatures
xml
loadnamespace
8.9 years ago
greg.mulhearn
• 0
0
votes
2
replies
1.1k
views
Issue with xml files downloaded with `pathview()`
pathview
kegg
xml
updated 4.7 years ago by
Luo Weijun
★ 1.6k • written 4.7 years ago by
anamaria
▴ 10
0
votes
3
replies
1.3k
views
Can't install DESeq2 because of libxml
deseq2
libxml
xml
updated 2.8 years ago by
Michael Love
41k • written 2.8 years ago by
Fátima
• 0
0
votes
1
reply
1.2k
views
Accessing local installation of biomart results in "Unexpected format to the list of available marts"
mart
martconfigurator
biomaRt
xml
updated 3.3 years ago by
Mike Smith
★ 6.5k • written 3.3 years ago by
anhvo711
• 0
0
votes
6
replies
2.6k
views
not able to install geoquery package
microarrays
xml
RCurl
libxml2
libcurl
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
farahqureshi5
• 0
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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