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Answer: FeaturePlot in scater
by
alan.ocallaghan
▴ 70
Something like this? ``` r library("scater") example_sce <- mockSCE() example_sce <- logNormCounts(example_sce) example_sce <- r…
Answer: Analyzing barcode sequencing experiments with DESeq2/edgeR
by
Gordon Smyth
45k
Dai Z, Sheridan JM, Gearing, LJ, Moore, DL, Su, S, Wormald, S, Wilcox, S, O'Connor, L, Dickins, RA, Blewitt, ME, Ritchie, ME (2014). edgeR:…
Comment: How can i fix this problem in R
by
Habib
• 0
i have input this BiocManager::install("S4Vectors") and my answer was: Error: unexpected '&' in "BiocManager::install(&"
Answer: How can i fix this problem in R
by
Steve Lianoglou
13k
This could be a sign of a b0rked installation, but I'd start with trying to reinstall the S4Vectors package and seeing what new issues (if …
Comment: Using Age or other numerical variable to model expression in deseq2
by
krushnach80
• 0
yes in my metadata I checked its not turned into factor.. simple question what is the `intercept` in case of when I using age in my design …
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A: ChIPQC bam and bed files question
Answer: differential loop using DESeq2
Comment: Using Age or other numerical variable to model expression in deseq2
Comment: Using Age or other numerical variable to model expression in deseq2
C: DESeq2 lfcShrink() usage of coef vs. usage of contrast
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