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yeast
•
reset
3
votes
4
replies
1.9k
views
ORF lengths using Yeast Annotation package
yeast
genomicranges
10.3 years ago
dktarathym
• 0
0
votes
4
replies
1.5k
views
Gostats with Yeast annotation
Annotation
GO
Yeast
GOstats
Annotation
GO
Yeast
GOstats
updated 16.6 years ago by
Marc Carlson
★ 7.2k • written 16.6 years ago by
Alex Gutteridge
▴ 650
0
votes
3
replies
1.4k
views
Error doing Mas5 calculation with Simpleaffy package
Yeast
affy
simpleaffy
Yeast
affy
simpleaffy
updated 20.7 years ago by
Crispin Miller
★ 1.1k • written 20.8 years ago by
Rudy.vanEijsden@GEN.unimaas.nl
▴ 50
0
votes
15
replies
3.3k
views
Rsubread crashes in 32bit linux
Yeast
Rsubread
Yeast
Rsubread
updated 12.7 years ago by
Wei Shi
★ 3.6k • written 12.7 years ago by
Robert Castelo
★ 3.4k
0
votes
2
replies
1.2k
views
SimpleAffy: problem with Yeast Genome 2.0 Array
Yeast
cdf
simpleaffy
Yeast
cdf
simpleaffy
updated 19.3 years ago by
Jenny Drnevich
★ 2.2k • written 19.3 years ago by
Glynn, Earl
▴ 170
0
votes
2
replies
1.3k
views
Probe pairs location on chips // ANOVA
Yeast
ygs98
probe
affy
Yeast
ygs98
probe
affy
updated 22.8 years ago by
Byron Ellis
▴ 280 • written 22.8 years ago by
julien.sylvestre@wotan.ens.fr
▴ 50
0
votes
2
replies
954
views
affy package and segmentation error
Yeast
Yeast
updated 20.3 years ago by
lgautier@altern.org
▴ 950 • written 20.3 years ago by
Hua Li
▴ 40
0
votes
3
replies
1.3k
views
trouble using GCRMA
Yeast
cdf
gcrma
Yeast
cdf
gcrma
updated 17.7 years ago by
Zhijin Jean Wu
▴ 200 • written 17.7 years ago by
wong
▴ 10
0
votes
2
replies
1.1k
views
affy cel + cdf files content
Yeast
cdf
probe
Yeast
cdf
probe
22.6 years ago
Laurent Gautier
★ 2.3k
0
votes
3
replies
1.3k
views
getting closer on YEAST 2.0 annotation...
Annotation
GUI
Yeast
probe
Annotation
GUI
Yeast
probe
updated 20.0 years ago by
John Zhang
★ 2.9k • written 20.0 years ago by
Jacob Michaelson
▴ 320
0
votes
2
replies
1.3k
views
AnnBuilder questions
Annotation
GO
Yeast
hgu95av2
probe
geneplotter
AnnBuilder
Annotation
GO
Yeast
hgu95av2
updated 17.5 years ago by
Marc Carlson
★ 7.2k • written 17.5 years ago by
melany black
▴ 30
0
votes
3
replies
1.6k
views
Error using getMeans function in Ringo/Starr
Yeast
probe
Ringo
Yeast
probe
Ringo
14.8 years ago
Noah Dowell
▴ 410
0
votes
10
replies
1.8k
views
how to build a GOstats-compatible annotation package for plasmodium falciparum?
Annotation
Yeast
GOstats
Annotation
Yeast
GOstats
updated 17.3 years ago by
Dave Berger
▴ 30 • written 17.3 years ago by
Paul Shannon
★ 1.1k
0
votes
2
replies
2.3k
views
GOSim yeast
GO
Yeast
GOSim
GO
Yeast
GOSim
updated 7.9 years ago by
solis
• 0 • written 12.8 years ago by
Guest User
★ 13k
0
votes
2
replies
1.0k
views
index between genes and pathways
Pathways
GO
Yeast
Pathways
GO
Yeast
updated 21.3 years ago by
rgentleman
★ 5.5k • written 21.3 years ago by
Shih-Te Yang
▴ 80
0
votes
2
replies
1.6k
views
New gage package: Generally Applicable Gene-set/Pathway Analysis
Sequencing
Microarray
Pathways
GO
Yeast
gage
Sequencing
Microarray
Pathways
GO
Yeast
14.3 years ago
Luo Weijun
★ 1.6k
3
votes
3
replies
2.4k
views
Goseq and yeast
goseq
yeast
10.0 years ago
Marek Gierlinski
▴ 30
0
votes
2
replies
1.7k
views
annaffy: YEAST vs. Affy YEAST_2 annotation
Annotation
Yeast
probe
annaffy
AnnBuilder
Annotation
Yeast
probe
annaffy
AnnBuilder
updated 20.0 years ago by
Colin A. Smith
▴ 220 • written 20.0 years ago by
Jacob Michaelson
▴ 320
0
votes
2
replies
1.3k
views
trouble with yeastann function in AnnBuilder
Annotation
Yeast
probe
AnnBuilder
safe
Annotation
Yeast
probe
AnnBuilder
safe
updated 20.0 years ago by
John Zhang
▴ 10 • written 20.1 years ago by
Jacob Michaelson
▴ 320
0
votes
3
replies
1.6k
views
Gostats with Yeast annotation
Microarray
Annotation
GO
Cancer
Yeast
GOstats
Microarray
Annotation
GO
Cancer
Yeast
16.0 years ago
Yolande Tra
▴ 160
0
votes
8
replies
2.3k
views
Rsubread alingner
Alignment
Yeast
Rsubread
Alignment
Yeast
Rsubread
13.8 years ago
Wei Shi
★ 3.6k
0
votes
2
replies
2.8k
views
org.Sc.sgd.db: Yeast ensembl ID to entrez ID conversion problem
GO
Yeast
GO
Yeast
14.9 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.2k
views
Several questions goCluster and GOstats...
Annotation
GO
Visualization
Yeast
goCluster
Annotation
GO
Visualization
Yeast
goCluster
updated 19.5 years ago by
Gunnar Wrobel
▴ 60 • written 19.5 years ago by
Lourdes Peña Castillo
▴ 140
0
votes
1
reply
928
views
Question about affy
Yeast
affy
Yeast
affy
updated 21.9 years ago by
Rafael A. Irizarry
★ 2.3k • written 21.9 years ago by
Mary Logue
▴ 10
0
votes
1
reply
1.3k
views
simLL method in GOstats to measure distances between yeast genes
Yeast
hgu95av2
ygs98
Yeast
hgu95av2
ygs98
updated 19.7 years ago by
rgentleman
★ 5.5k • written 19.7 years ago by
Maria Persico
▴ 100
0
votes
1
reply
1.2k
views
Cho et al.'s Expression Dataset in Yeast
Yeast
cycle
Yeast
cycle
updated 19.8 years ago by
xpeng
▴ 60 • written 19.8 years ago by
Ho-Joon Lee
▴ 20
0
votes
1
reply
1.0k
views
problem reading yeast data
Microarray
Yeast
cdf
Microarray
Yeast
cdf
updated 22.1 years ago by
Laurent Gautier
★ 2.3k • written 22.1 years ago by
Lei Zhuge
▴ 10
0
votes
2
replies
2.1k
views
GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation
GO
Yeast
db0
probe
topGO
AnnotationDbi
Annotation
GO
Yeast
db0
probe
topGO
updated 15.7 years ago by
Marc Carlson
★ 7.2k • written 15.7 years ago by
Gaspard Lequeux
▴ 20
0
votes
1
reply
1.2k
views
gocluster error: Ontology MF has no GO terms left. in
Annotation
GO
Yeast
mgug4122a
goCluster
Annotation
GO
Yeast
mgug4122a
goCluster
updated 19.1 years ago by
Gunnar Wrobel
▴ 60 • written 19.1 years ago by
Yong Jiang
▴ 30
0
votes
1
reply
1.3k
views
Annotating yeast ORFs with GO and KEGG
GO
Yeast
annotate
Category
GO
Yeast
annotate
Category
updated 21.3 years ago by
Ken Simpson
▴ 70 • written 21.3 years ago by
Shih-Te Yang
▴ 80
0
votes
1
reply
1.4k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
updated 15.4 years ago by
Marc Carlson
★ 7.2k • written 15.5 years ago by
Gang Chen
▴ 20
0
votes
1
reply
1.4k
views
Help with Oligo Package: Extracting and Graphing
Transcription
Normalization
Yeast
probe
affy
graph
tilingArray
oligo
pdInfoBuilder
Starr
updated 15.3 years ago by
Tobias Straub
▴ 430 • written 15.3 years ago by
Noah Dowell
▴ 410
0
votes
6
replies
1.9k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast
ChIPpeakAnno
Starr
Yeast
ChIPpeakAnno
Starr
updated 14.7 years ago by
Julie Zhu
★ 4.3k • written 14.7 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
996
views
Microarray data with outliers
Yeast
Yeast
updated 17.3 years ago by
Sean Davis
21k • written 17.3 years ago by
JUAN MIGUEL MARIN DIAZARAQUE
▴ 70
0
votes
5
replies
1.6k
views
affy Yeast 2.0 annotation
Annotation
Yeast
affy
limma
AnnBuilder
Annotation
Yeast
affy
limma
AnnBuilder
updated 20.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 20.1 years ago by
Jacob Michaelson
▴ 320
0
votes
1
reply
1.4k
views
GOstats: HyperGTest for KEGG
Annotation
GO
Yeast
hgu133a
hgu133b
hgu133plus2
hgu95a
hgu95av2
hgug4110b
hgug4112a
GO
updated 16.1 years ago by
Marc Carlson
★ 7.2k • written 16.1 years ago by
Paul Evans
▴ 180
0
votes
2
replies
1.4k
views
biological reps and dye-swaps and duplicate spots in a common reference design
Yeast
limma
a4
Yeast
limma
a4
updated 16.3 years ago by
Jenny Drnevich
★ 2.0k • written 16.3 years ago by
sylvie pinloche
▴ 10
0
votes
9
replies
1.6k
views
Help with 'annotation' in GOHyeprGParamsClass
Annotation
GO
Yeast
Category
Annotation
GO
Yeast
Category
updated 16.3 years ago by
rgentleman
★ 5.5k • written 16.3 years ago by
Jason Myers
▴ 50
0
votes
4
replies
1.3k
views
applicability of tilingArray package
Normalization
Yeast
affy
tilingArray
Normalization
Yeast
affy
tilingArray
updated 16.3 years ago by
Wolfgang Huber
★ 13k • written 16.3 years ago by
Michael Palumbo
▴ 50
0
votes
2
replies
1.2k
views
YEAST package
Pathways
Yeast
Pathways
Yeast
15.4 years ago
suman Duvvuru
▴ 20
0
votes
3
replies
1.0k
views
Yeast and LocuslinkIDs
GO
Yeast
GO
Yeast
updated 20.1 years ago by
Sean Davis
21k • written 20.1 years ago by
Christina Kendziorski
▴ 60
0
votes
1
reply
1.1k
views
GOENTREZID2GO hard-coded in GOstats:makeGOGraph
Annotation
GO
Network
Yeast
graph
GOstats
Annotation
GO
Network
Yeast
graph
GOstats
updated 18.2 years ago by
Seth Falcon
★ 7.4k • written 18.2 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
1.9k
views
create an new AnnotatedDataFrame
Survival
Yeast
Biobase
genefilter
tkWidgets
marray
convert
arrayMagic
affyio
Survival
updated 17.5 years ago by
Martin Morgan
25k • written 17.5 years ago by
Yad Ghavi-Helm
▴ 30
0
votes
1
reply
3.6k
views
RE : create an new AnnotatedDataFrame
Annotation
Survival
Yeast
Biobase
genefilter
tkWidgets
marray
convert
arrayMagic
affyio
updated 17.5 years ago by
Martin Morgan
25k • written 17.5 years ago by
Yad Ghavi-Helm
▴ 30
0
votes
6
replies
1.6k
views
Sc03b_MR_v04 CDF package
Genetics
Yeast
cdf
Genetics
Yeast
cdf
updated 16.5 years ago by
James W. MacDonald
68k • written 16.5 years ago by
Ludo Muller
▴ 50
0
votes
5
replies
1.8k
views
KEGG & hyperGTest: an example?
Annotation
Yeast
Organism
Annotation
Yeast
Organism
updated 17.3 years ago by
Seth Falcon
▴ 150 • written 17.3 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
1.5k
views
[Bioc-devel] SNPscan -> SNPchip
SNP
Annotation
Yeast
Biobase
SNPchip
SNP
Annotation
Yeast
Biobase
SNPchip
updated 18.3 years ago by
Rob Scharpf
▴ 250 • written 18.3 years ago by
Justin Borevitz
▴ 170
0
votes
2
replies
1.0k
views
Run GOHyperG on yeast without specifying a chip
Microarray
Yeast
PROcess
Microarray
Yeast
PROcess
updated 18.6 years ago by
James W. MacDonald
68k • written 18.6 years ago by
Maria Persico
▴ 100
0
votes
1
reply
763
views
Affymetrix Yeast Tiling Arrays
Yeast
affy
Yeast
affy
updated 16.4 years ago by
Steve Lianoglou
★ 13k • written 16.4 years ago by
Paco Recca
▴ 50
0
votes
1
reply
934
views
yeast2 LOCUSID environment
Annotation
Yeast
yeast2
Annotation
Yeast
yeast2
updated 18.7 years ago by
John Zhang
★ 2.9k • written 18.7 years ago by
Jacob Michaelson
▴ 320
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