Showing : yeast • reset
3
votes
4
replies
2.1k
views
ORF lengths using Yeast Annotation package
yeast genomicranges
11.2 years ago dktarathym • 0
0
votes
4
replies
1.7k
views
Gostats with Yeast annotation
Annotation GO Yeast GOstats Annotation GO Yeast GOstats
updated 17.4 years ago by ★ 7.2k • written 17.4 years ago by ▴ 650
0
votes
3
replies
1.5k
views
Error doing Mas5 calculation with Simpleaffy package
Yeast affy simpleaffy Yeast affy simpleaffy
updated 21.6 years ago by ★ 1.1k • written 21.6 years ago by ▴ 50
0
votes
15
replies
3.9k
views
Rsubread crashes in 32bit linux
Yeast Rsubread Yeast Rsubread
updated 13.5 years ago by ★ 3.6k • written 13.5 years ago by ★ 3.4k
0
votes
2
replies
1.3k
views
SimpleAffy: problem with Yeast Genome 2.0 Array
Yeast cdf simpleaffy Yeast cdf simpleaffy
updated 20.1 years ago by ★ 2.2k • written 20.1 years ago by ▴ 170
0
votes
2
replies
1.4k
views
Probe pairs location on chips // ANOVA
Yeast ygs98 probe affy Yeast ygs98 probe affy
updated 23.6 years ago by ▴ 280 • written 23.6 years ago by ▴ 50
0
votes
2
replies
1.1k
views
affy package and segmentation error
Yeast Yeast
updated 21.1 years ago by ▴ 950 • written 21.1 years ago by ▴ 40
0
votes
3
replies
1.5k
views
trouble using GCRMA
Yeast cdf gcrma Yeast cdf gcrma
updated 18.5 years ago by ▴ 200 • written 18.5 years ago by ▴ 10
0
votes
2
replies
1.2k
views
affy cel + cdf files content
Yeast cdf probe Yeast cdf probe
23.5 years ago Laurent Gautier ★ 2.3k
0
votes
3
replies
1.5k
views
getting closer on YEAST 2.0 annotation...
Annotation GUI Yeast probe Annotation GUI Yeast probe
updated 20.8 years ago by ★ 2.9k • written 20.8 years ago by ▴ 320
0
votes
2
replies
1.5k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 18.3 years ago by ★ 7.2k • written 18.3 years ago by ▴ 30
0
votes
3
replies
1.7k
views
Error using getMeans function in Ringo/Starr
Yeast probe Ringo Yeast probe Ringo
15.6 years ago Noah Dowell ▴ 410
0
votes
10
replies
2.2k
views
how to build a GOstats-compatible annotation package for plasmodium falciparum?
Annotation Yeast GOstats Annotation Yeast GOstats
updated 18.1 years ago by ▴ 30 • written 18.1 years ago by ★ 1.1k
0
votes
2
replies
2.5k
views
GOSim yeast
GO Yeast GOSim GO Yeast GOSim
updated 8.8 years ago by • 0 • written 13.6 years ago by ★ 13k
0
votes
2
replies
1.2k
views
index between genes and pathways
Pathways GO Yeast Pathways GO Yeast
updated 22.1 years ago by ★ 5.5k • written 22.1 years ago by ▴ 80
0
votes
2
replies
1.8k
views
New gage package: Generally Applicable Gene-set/Pathway Analysis
Sequencing Microarray Pathways GO Yeast gage Sequencing Microarray Pathways GO Yeast
15.2 years ago Luo Weijun ★ 1.6k
3
votes
3
replies
2.6k
views
Goseq and yeast
goseq yeast
10.8 years ago Marek Gierlinski ▴ 30
0
votes
2
replies
1.9k
views
annaffy: YEAST vs. Affy YEAST_2 annotation
Annotation Yeast probe annaffy AnnBuilder Annotation Yeast probe annaffy AnnBuilder
updated 20.9 years ago by ▴ 220 • written 20.9 years ago by ▴ 320
0
votes
2
replies
1.4k
views
trouble with yeastann function in AnnBuilder
Annotation Yeast probe AnnBuilder safe Annotation Yeast probe AnnBuilder safe
updated 20.9 years ago by ▴ 10 • written 20.9 years ago by ▴ 320
0
votes
3
replies
1.9k
views
Gostats with Yeast annotation
Microarray Annotation GO Cancer Yeast GOstats Microarray Annotation GO Cancer Yeast
16.9 years ago Yolande Tra ▴ 160
0
votes
8
replies
2.6k
views
Rsubread alingner
Alignment Yeast Rsubread Alignment Yeast Rsubread
14.7 years ago Wei Shi ★ 3.6k
0
votes
2
replies
3.1k
views
org.Sc.sgd.db: Yeast ensembl ID to entrez ID conversion problem
GO Yeast GO Yeast
15.7 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.4k
views
Several questions goCluster and GOstats...
Annotation GO Visualization Yeast goCluster Annotation GO Visualization Yeast goCluster
updated 20.3 years ago by ▴ 60 • written 20.3 years ago by ▴ 140
0
votes
1
reply
1.1k
views
Question about affy
Yeast affy Yeast affy
updated 22.8 years ago by ★ 2.3k • written 22.8 years ago by ▴ 10
0
votes
1
reply
1.4k
views
simLL method in GOstats to measure distances between yeast genes
Yeast hgu95av2 ygs98 Yeast hgu95av2 ygs98
updated 20.6 years ago by ★ 5.5k • written 20.6 years ago by ▴ 100
0
votes
1
reply
1.3k
views
Cho et al.'s Expression Dataset in Yeast
Yeast cycle Yeast cycle
updated 20.6 years ago by ▴ 60 • written 20.6 years ago by ▴ 20
0
votes
1
reply
1.1k
views
problem reading yeast data
Microarray Yeast cdf Microarray Yeast cdf
updated 22.9 years ago by ★ 2.3k • written 22.9 years ago by ▴ 10
0
votes
2
replies
2.4k
views
GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation GO Yeast db0 probe topGO AnnotationDbi Annotation GO Yeast db0 probe topGO
updated 16.5 years ago by ★ 7.2k • written 16.5 years ago by ▴ 20
0
votes
1
reply
1.3k
views
gocluster error: Ontology MF has no GO terms left. in
Annotation GO Yeast mgug4122a goCluster Annotation GO Yeast mgug4122a goCluster
updated 19.9 years ago by ▴ 60 • written 19.9 years ago by ▴ 30
0
votes
1
reply
1.6k
views
Annotating yeast ORFs with GO and KEGG
GO Yeast annotate Category GO Yeast annotate Category
updated 22.1 years ago by ▴ 70 • written 22.1 years ago by ▴ 80
0
votes
1
reply
1.6k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 16.3 years ago by ★ 7.2k • written 16.3 years ago by ▴ 20
0
votes
1
reply
1.6k
views
Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 16.1 years ago by ▴ 430 • written 16.1 years ago by ▴ 410
0
votes
6
replies
2.2k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast ChIPpeakAnno Starr Yeast ChIPpeakAnno Starr
updated 15.5 years ago by ★ 4.3k • written 15.5 years ago by ▴ 410
0
votes
1
reply
1.1k
views
Microarray data with outliers
Yeast Yeast
updated 18.2 years ago by 21k • written 18.2 years ago by ▴ 70
0
votes
5
replies
1.8k
views
affy Yeast 2.0 annotation
Annotation Yeast affy limma AnnBuilder Annotation Yeast affy limma AnnBuilder
updated 20.9 years ago by 6.7k • written 20.9 years ago by ▴ 320
0
votes
1
reply
1.5k
views
GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 16.9 years ago by ★ 7.2k • written 16.9 years ago by ▴ 180
0
votes
2
replies
1.6k
views
biological reps and dye-swaps and duplicate spots in a common reference design
Yeast limma a4 Yeast limma a4
updated 17.1 years ago by ★ 2.0k • written 17.1 years ago by ▴ 10
0
votes
9
replies
1.9k
views
Help with 'annotation' in GOHyeprGParamsClass
Annotation GO Yeast Category Annotation GO Yeast Category
updated 17.1 years ago by ★ 5.5k • written 17.1 years ago by ▴ 50
0
votes
4
replies
1.6k
views
applicability of tilingArray package
Normalization Yeast affy tilingArray Normalization Yeast affy tilingArray
updated 17.1 years ago by ★ 13k • written 17.1 years ago by ▴ 50
0
votes
2
replies
1.4k
views
YEAST package
Pathways Yeast Pathways Yeast
16.2 years ago suman Duvvuru ▴ 20
0
votes
3
replies
1.2k
views
Yeast and LocuslinkIDs
GO Yeast GO Yeast
updated 20.9 years ago by 21k • written 20.9 years ago by ▴ 60
0
votes
1
reply
1.2k
views
GOENTREZID2GO hard-coded in GOstats:makeGOGraph
Annotation GO Network Yeast graph GOstats Annotation GO Network Yeast graph GOstats
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ★ 1.1k
0
votes
1
reply
2.1k
views
create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 18.4 years ago by 25k • written 18.4 years ago by ▴ 30
0
votes
1
reply
4.0k
views
RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 18.4 years ago by 25k • written 18.4 years ago by ▴ 30
0
votes
6
replies
1.8k
views
Sc03b_MR_v04 CDF package
Genetics Yeast cdf Genetics Yeast cdf
updated 17.3 years ago by 68k • written 17.3 years ago by ▴ 50
0
votes
5
replies
2.1k
views
KEGG & hyperGTest: an example?
Annotation Yeast Organism Annotation Yeast Organism
updated 18.2 years ago by ▴ 150 • written 18.2 years ago by ★ 1.1k
0
votes
1
reply
1.7k
views
[Bioc-devel] SNPscan -> SNPchip
SNP Annotation Yeast Biobase SNPchip SNP Annotation Yeast Biobase SNPchip
updated 19.1 years ago by ▴ 250 • written 19.1 years ago by ▴ 170
0
votes
2
replies
1.2k
views
Run GOHyperG on yeast without specifying a chip
Microarray Yeast PROcess Microarray Yeast PROcess
updated 19.5 years ago by 68k • written 19.5 years ago by ▴ 100
0
votes
1
reply
908
views
Affymetrix Yeast Tiling Arrays
Yeast affy Yeast affy
updated 17.3 years ago by ★ 13k • written 17.3 years ago by ▴ 50
0
votes
1
reply
1.0k
views
yeast2 LOCUSID environment
Annotation Yeast yeast2 Annotation Yeast yeast2
updated 19.5 years ago by ★ 2.9k • written 19.5 years ago by ▴ 320
110 results • Page 1 of 3
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Replies
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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