Showing : yeast • reset
3
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4
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ORF lengths using Yeast Annotation package
yeast genomicranges
9.5 years ago dktarathym • 0
3
votes
3
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2.0k
views
Goseq and yeast
goseq yeast
9.2 years ago Marek Gierlinski ▴ 30
1
vote
2
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1.8k
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GOSemSim problem for yeast proteins
GOSemSim yeast
updated 9.2 years ago by ★ 1.2k • written 9.2 years ago by ▴ 10
0
votes
2
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1.2k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 30
0
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0
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916
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[julien.sylvestre@wotan.ens.fr: Re: pb using affy // Anova with R]
Microarray Yeast genefilter affy Microarray Yeast genefilter affy
22.0 years ago Laurent Gautier ▴ 150
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0
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1.0k
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(1) Anova for 12 Affy yeast chips (Yg98) // (2) Problem fitting Li&Wong model with Affy 1.0 :
GO Yeast cdf genefilter affy PROcess GO Yeast cdf genefilter affy PROcess
22.0 years ago julien.sylvestre@wotan.ens.fr ▴ 50
0
votes
0
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975
views
pb using affy // Anova with R
Microarray Yeast affy Microarray Yeast affy
22.0 years ago julien.sylvestre@wotan.ens.fr ▴ 50
0
votes
0
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703
views
affy cel + cdf files content
Yeast cdf probe Yeast cdf probe
21.8 years ago julien.sylvestre@wotan.ens.fr ▴ 50
0
votes
2
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917
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affy cel + cdf files content
Yeast cdf probe Yeast cdf probe
21.8 years ago Laurent Gautier ★ 2.3k
0
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0
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836
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yeast annotation?
Annotation Yeast Annotation Yeast
21.8 years ago Anthony Rossini ▴ 530
0
votes
1
reply
919
views
problem reading yeast data
Microarray Yeast cdf Microarray Yeast cdf
updated 21.2 years ago by ★ 2.3k • written 21.2 years ago by ▴ 10
0
votes
0
replies
643
views
affy memory size and Windows
Yeast affy Yeast affy
21.2 years ago Virginia Marks ▴ 10
0
votes
1
reply
744
views
Question about affy
Yeast affy Yeast affy
updated 21.1 years ago by ★ 2.3k • written 21.1 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Annotating yeast ORFs with GO and KEGG
GO Yeast annotate Category GO Yeast annotate Category
updated 20.4 years ago by ▴ 70 • written 20.4 years ago by ▴ 80
0
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0
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871
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Re: metaData
Annotation GO Yeast probe Annotation GO Yeast probe
20.3 years ago John Zhang ★ 2.9k
0
votes
0
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708
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Problems with mas5calls for ygs98 chips
Yeast probe Yeast probe
18.1 years ago Jarno Tuimala ▴ 140
0
votes
3
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1.1k
views
Error doing Mas5 calculation with Simpleaffy package
Yeast affy simpleaffy Yeast affy simpleaffy
updated 19.9 years ago by ★ 1.1k • written 20.0 years ago by ▴ 50
0
votes
2
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809
views
affy package and segmentation error
Yeast Yeast
updated 19.5 years ago by ▴ 950 • written 19.5 years ago by ▴ 40
0
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0
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597
views
cdf environment for Yeast 2.0 array
Yeast cdf affy Yeast cdf affy
19.3 years ago Jakub Orzechowski Westholm ▴ 40
0
votes
3
replies
823
views
Yeast and LocuslinkIDs
GO Yeast GO Yeast
updated 19.3 years ago by 21k • written 19.3 years ago by ▴ 60
0
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5
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1.3k
views
affy Yeast 2.0 annotation
Annotation Yeast affy limma AnnBuilder Annotation Yeast affy limma AnnBuilder
updated 19.2 years ago by 6.7k • written 19.2 years ago by ▴ 320
0
votes
2
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1.1k
views
trouble with yeastann function in AnnBuilder
Annotation Yeast probe AnnBuilder safe Annotation Yeast probe AnnBuilder safe
updated 19.2 years ago by ▴ 10 • written 19.2 years ago by ▴ 320
0
votes
2
replies
1.5k
views
annaffy: YEAST vs. Affy YEAST_2 annotation
Annotation Yeast probe annaffy AnnBuilder Annotation Yeast probe annaffy AnnBuilder
updated 19.2 years ago by ▴ 220 • written 19.2 years ago by ▴ 320
0
votes
3
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1.1k
views
getting closer on YEAST 2.0 annotation...
Annotation GUI Yeast probe Annotation GUI Yeast probe
updated 19.2 years ago by ★ 2.9k • written 19.2 years ago by ▴ 320
0
votes
1
reply
1.0k
views
Cho et al.'s Expression Dataset in Yeast
Yeast cycle Yeast cycle
updated 19.0 years ago by ▴ 60 • written 19.0 years ago by ▴ 20
0
votes
1
reply
1.1k
views
simLL method in GOstats to measure distances between yeast genes
Yeast hgu95av2 ygs98 Yeast hgu95av2 ygs98
updated 18.9 years ago by ★ 5.5k • written 18.9 years ago by ▴ 100
0
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1
reply
1.0k
views
Several questions goCluster and GOstats...
Annotation GO Visualization Yeast goCluster Annotation GO Visualization Yeast goCluster
updated 18.6 years ago by ▴ 60 • written 18.6 years ago by ▴ 140
0
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2
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987
views
SimpleAffy: problem with Yeast Genome 2.0 Array
Yeast cdf simpleaffy Yeast cdf simpleaffy
updated 18.4 years ago by ★ 2.2k • written 18.5 years ago by ▴ 170
0
votes
1
reply
1.0k
views
gocluster error: Ontology MF has no GO terms left. in
Annotation GO Yeast mgug4122a goCluster Annotation GO Yeast mgug4122a goCluster
updated 18.3 years ago by ▴ 60 • written 18.3 years ago by ▴ 30
0
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0
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734
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Fwd: Re: Run GOHyperG without specifying a chip
Annotation Yeast Annotation Yeast
18.2 years ago Mikko Arvas ▴ 90
0
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1
reply
773
views
Unable to get expression-values from cel-files of yeast
Yeast cdf affy Yeast cdf affy
updated 18.1 years ago by 65k • written 18.1 years ago by ▴ 10
0
votes
2
replies
861
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index between genes and pathways
Pathways GO Yeast Pathways GO Yeast
updated 20.4 years ago by ★ 5.5k • written 20.4 years ago by ▴ 80
0
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0
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1.0k
views
High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27
SNP Microarray Proteomics Normalization Classification Cancer CGH Yeast SNP Microarray
18.1 years ago Mark Reimers ▴ 70
0
votes
1
reply
792
views
yeast2 LOCUSID environment
Annotation Yeast yeast2 Annotation Yeast yeast2
updated 17.9 years ago by ★ 2.9k • written 17.9 years ago by ▴ 320
0
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2
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881
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Run GOHyperG on yeast without specifying a chip
Microarray Yeast PROcess Microarray Yeast PROcess
updated 17.8 years ago by 65k • written 17.8 years ago by ▴ 100
0
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1
reply
1.3k
views
[Bioc-devel] SNPscan -> SNPchip
SNP Annotation Yeast Biobase SNPchip SNP Annotation Yeast Biobase SNPchip
updated 17.5 years ago by ▴ 250 • written 17.5 years ago by ▴ 170
0
votes
1
reply
940
views
GOENTREZID2GO hard-coded in GOstats:makeGOGraph
Annotation GO Network Yeast graph GOstats Annotation GO Network Yeast graph GOstats
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ★ 1.1k
0
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0
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966
views
Differentially Expressed Genes in Time Series with Replications
Yeast cycle Yeast cycle
17.2 years ago peter robinson ▴ 300
0
votes
0
replies
586
views
SemSim GOCount question
GO Yeast GO Yeast
17.1 years ago Ariel Chernomoretz ▴ 170
0
votes
0
replies
569
views
Question about Yeast Microarray
Yeast Yeast
16.9 years ago Ajit Kulkarni ▴ 10
0
votes
0
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722
views
Yeast Tiling Array BPMAP
Yeast Yeast
16.9 years ago iromashk@student.umass.edu ▴ 30
0
votes
3
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1.2k
views
trouble using GCRMA
Yeast cdf gcrma Yeast cdf gcrma
updated 16.9 years ago by ▴ 200 • written 16.9 years ago by ▴ 10
0
votes
1
reply
1.6k
views
create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 30
0
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1
reply
3.2k
views
RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 30
0
votes
1
reply
865
views
Microarray data with outliers
Yeast Yeast
updated 16.5 years ago by 21k • written 16.5 years ago by ▴ 70
0
votes
5
replies
1.5k
views
KEGG & hyperGTest: an example?
Annotation Yeast Organism Annotation Yeast Organism
updated 16.5 years ago by ▴ 150 • written 16.5 years ago by ★ 1.1k
0
votes
10
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1.5k
views
how to build a GOstats-compatible annotation package for plasmodium falciparum?
Annotation Yeast GOstats Annotation Yeast GOstats
updated 16.5 years ago by ▴ 30 • written 16.5 years ago by ★ 1.1k
0
votes
0
replies
855
views
made4, memory issues
Network Clustering Cancer Yeast made4 Network Clustering Cancer Yeast made4
16.5 years ago Aedin Culhane ▴ 510
0
votes
0
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1.8k
views
Median-Interquartile Normalization
Microarray SystemsBiology Annotation GO Preprocessing Clustering Cancer Yeast Organism GO
16.5 years ago McGee, Monnie ▴ 300
0
votes
2
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1.1k
views
Probe pairs location on chips // ANOVA
Yeast ygs98 probe affy Yeast ygs98 probe affy
updated 22.0 years ago by ▴ 280 • written 22.0 years ago by ▴ 50
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq filtering specific to contrasts by Michael Love 41k
Right, I was suggesting subsetting as a valid choice for "treatment and control samples at each timepoint"
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…
Comment: DESeq2 setting significant p-value by Dev • 0
Sir but when I put in the expression data via the csv file, it was showing the gene names then but now when i set it in the form factor it …
Answer: OrgDb for maize by James W. MacDonald 65k
``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…
Comment: Which input file is used for DGEList in EgdeR? by i.atanasoai • 0
Understood, Thank you very much for the reply, very kind.
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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