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yeast
•
reset
3
votes
4
replies
1.9k
views
ORF lengths using Yeast Annotation package
yeast
genomicranges
10.4 years ago • updated 10.3 years ago
dktarathym
• 0
3
votes
3
replies
2.4k
views
Goseq and yeast
goseq
yeast
10.0 years ago
Marek Gierlinski
▴ 30
1
vote
2
replies
2.0k
views
GOSemSim problem for yeast proteins
GOSemSim
yeast
updated 10.0 years ago by
Guangchuang Yu
★ 1.2k • written 10.0 years ago by
horcsct
▴ 10
0
votes
2
replies
1.3k
views
AnnBuilder questions
Annotation
GO
Yeast
hgu95av2
probe
geneplotter
AnnBuilder
Annotation
GO
Yeast
hgu95av2
updated 17.5 years ago by
Marc Carlson
★ 7.2k • written 17.5 years ago by
melany black
▴ 30
0
votes
0
replies
1.0k
views
[julien.sylvestre@wotan.ens.fr: Re: pb using affy // Anova with R]
Microarray
Yeast
genefilter
affy
Microarray
Yeast
genefilter
affy
22.8 years ago
Laurent Gautier
▴ 150
0
votes
0
replies
1.1k
views
(1) Anova for 12 Affy yeast chips (Yg98) // (2) Problem fitting Li&Wong model with Affy 1.0 :
GO
Yeast
cdf
genefilter
affy
PROcess
GO
Yeast
cdf
genefilter
affy
PROcess
22.8 years ago
julien.sylvestre@wotan.ens.fr
▴ 50
0
votes
0
replies
1.1k
views
pb using affy // Anova with R
Microarray
Yeast
affy
Microarray
Yeast
affy
22.8 years ago
julien.sylvestre@wotan.ens.fr
▴ 50
0
votes
0
replies
806
views
affy cel + cdf files content
Yeast
cdf
probe
Yeast
cdf
probe
22.7 years ago
julien.sylvestre@wotan.ens.fr
▴ 50
0
votes
2
replies
1.1k
views
affy cel + cdf files content
Yeast
cdf
probe
Yeast
cdf
probe
22.7 years ago
Laurent Gautier
★ 2.3k
0
votes
0
replies
1.0k
views
yeast annotation?
Annotation
Yeast
Annotation
Yeast
22.6 years ago
Anthony Rossini
▴ 530
0
votes
1
reply
1.0k
views
problem reading yeast data
Microarray
Yeast
cdf
Microarray
Yeast
cdf
updated 22.1 years ago by
Laurent Gautier
★ 2.3k • written 22.1 years ago by
Lei Zhuge
▴ 10
0
votes
0
replies
751
views
affy memory size and Windows
Yeast
affy
Yeast
affy
22.0 years ago
Virginia Marks
▴ 10
0
votes
1
reply
930
views
Question about affy
Yeast
affy
Yeast
affy
updated 21.9 years ago by
Rafael A. Irizarry
★ 2.3k • written 21.9 years ago by
Mary Logue
▴ 10
0
votes
1
reply
1.3k
views
Annotating yeast ORFs with GO and KEGG
GO
Yeast
annotate
Category
GO
Yeast
annotate
Category
updated 21.3 years ago by
Ken Simpson
▴ 70 • written 21.3 years ago by
Shih-Te Yang
▴ 80
0
votes
0
replies
999
views
Re: metaData
Annotation
GO
Yeast
probe
Annotation
GO
Yeast
probe
21.1 years ago
John Zhang
★ 2.9k
0
votes
0
replies
847
views
Problems with mas5calls for ygs98 chips
Yeast
probe
Yeast
probe
19.0 years ago
Jarno Tuimala
▴ 140
0
votes
3
replies
1.4k
views
Error doing Mas5 calculation with Simpleaffy package
Yeast
affy
simpleaffy
Yeast
affy
simpleaffy
updated 20.8 years ago by
Crispin Miller
★ 1.1k • written 20.8 years ago by
Rudy.vanEijsden@GEN.unimaas.nl
▴ 50
0
votes
2
replies
955
views
affy package and segmentation error
Yeast
Yeast
updated 20.3 years ago by
lgautier@altern.org
▴ 950 • written 20.3 years ago by
Hua Li
▴ 40
0
votes
0
replies
694
views
cdf environment for Yeast 2.0 array
Yeast
cdf
affy
Yeast
cdf
affy
20.2 years ago
Jakub Orzechowski Westholm
▴ 40
0
votes
3
replies
1.0k
views
Yeast and LocuslinkIDs
GO
Yeast
GO
Yeast
updated 20.1 years ago by
Sean Davis
21k • written 20.1 years ago by
Christina Kendziorski
▴ 60
0
votes
5
replies
1.6k
views
affy Yeast 2.0 annotation
Annotation
Yeast
affy
limma
AnnBuilder
Annotation
Yeast
affy
limma
AnnBuilder
updated 20.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 20.1 years ago by
Jacob Michaelson
▴ 320
0
votes
2
replies
1.3k
views
trouble with yeastann function in AnnBuilder
Annotation
Yeast
probe
AnnBuilder
safe
Annotation
Yeast
probe
AnnBuilder
safe
updated 20.1 years ago by
John Zhang
▴ 10 • written 20.1 years ago by
Jacob Michaelson
▴ 320
0
votes
2
replies
1.7k
views
annaffy: YEAST vs. Affy YEAST_2 annotation
Annotation
Yeast
probe
annaffy
AnnBuilder
Annotation
Yeast
probe
annaffy
AnnBuilder
updated 20.0 years ago by
Colin A. Smith
▴ 220 • written 20.0 years ago by
Jacob Michaelson
▴ 320
0
votes
3
replies
1.3k
views
getting closer on YEAST 2.0 annotation...
Annotation
GUI
Yeast
probe
Annotation
GUI
Yeast
probe
updated 20.0 years ago by
John Zhang
★ 2.9k • written 20.0 years ago by
Jacob Michaelson
▴ 320
0
votes
1
reply
1.2k
views
Cho et al.'s Expression Dataset in Yeast
Yeast
cycle
Yeast
cycle
updated 19.8 years ago by
xpeng
▴ 60 • written 19.8 years ago by
Ho-Joon Lee
▴ 20
0
votes
1
reply
1.3k
views
simLL method in GOstats to measure distances between yeast genes
Yeast
hgu95av2
ygs98
Yeast
hgu95av2
ygs98
updated 19.7 years ago by
rgentleman
★ 5.5k • written 19.7 years ago by
Maria Persico
▴ 100
0
votes
1
reply
1.2k
views
Several questions goCluster and GOstats...
Annotation
GO
Visualization
Yeast
goCluster
Annotation
GO
Visualization
Yeast
goCluster
updated 19.5 years ago by
Gunnar Wrobel
▴ 60 • written 19.5 years ago by
Lourdes Peña Castillo
▴ 140
0
votes
2
replies
1.2k
views
SimpleAffy: problem with Yeast Genome 2.0 Array
Yeast
cdf
simpleaffy
Yeast
cdf
simpleaffy
updated 19.3 years ago by
Jenny Drnevich
★ 2.2k • written 19.3 years ago by
Glynn, Earl
▴ 170
0
votes
1
reply
1.2k
views
gocluster error: Ontology MF has no GO terms left. in
Annotation
GO
Yeast
mgug4122a
goCluster
Annotation
GO
Yeast
mgug4122a
goCluster
updated 19.1 years ago by
Gunnar Wrobel
▴ 60 • written 19.1 years ago by
Yong Jiang
▴ 30
0
votes
0
replies
856
views
Fwd: Re: Run GOHyperG without specifying a chip
Annotation
Yeast
Annotation
Yeast
19.0 years ago
Mikko Arvas
▴ 90
0
votes
1
reply
871
views
Unable to get expression-values from cel-files of yeast
Yeast
cdf
affy
Yeast
cdf
affy
updated 19.0 years ago by
James W. MacDonald
68k • written 19.0 years ago by
Roman Brunnemann
▴ 10
0
votes
2
replies
1.0k
views
index between genes and pathways
Pathways
GO
Yeast
Pathways
GO
Yeast
updated 21.3 years ago by
rgentleman
★ 5.5k • written 21.3 years ago by
Shih-Te Yang
▴ 80
0
votes
0
replies
1.2k
views
High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27
SNP
Microarray
Proteomics
Normalization
Classification
Cancer
CGH
Yeast
SNP
Microarray
19.0 years ago
Mark Reimers
▴ 70
0
votes
1
reply
935
views
yeast2 LOCUSID environment
Annotation
Yeast
yeast2
Annotation
Yeast
yeast2
updated 18.7 years ago by
John Zhang
★ 2.9k • written 18.7 years ago by
Jacob Michaelson
▴ 320
0
votes
2
replies
1.0k
views
Run GOHyperG on yeast without specifying a chip
Microarray
Yeast
PROcess
Microarray
Yeast
PROcess
updated 18.6 years ago by
James W. MacDonald
68k • written 18.6 years ago by
Maria Persico
▴ 100
0
votes
1
reply
1.5k
views
[Bioc-devel] SNPscan -> SNPchip
SNP
Annotation
Yeast
Biobase
SNPchip
SNP
Annotation
Yeast
Biobase
SNPchip
updated 18.3 years ago by
Rob Scharpf
▴ 250 • written 18.3 years ago by
Justin Borevitz
▴ 170
0
votes
1
reply
1.1k
views
GOENTREZID2GO hard-coded in GOstats:makeGOGraph
Annotation
GO
Network
Yeast
graph
GOstats
Annotation
GO
Network
Yeast
graph
GOstats
updated 18.2 years ago by
Seth Falcon
★ 7.4k • written 18.2 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
1.1k
views
Differentially Expressed Genes in Time Series with Replications
Yeast
cycle
Yeast
cycle
18.1 years ago
peter robinson
▴ 300
0
votes
0
replies
673
views
SemSim GOCount question
GO
Yeast
GO
Yeast
17.9 years ago
Ariel Chernomoretz
▴ 170
0
votes
0
replies
690
views
Question about Yeast Microarray
Yeast
Yeast
17.8 years ago
Ajit Kulkarni
▴ 10
0
votes
0
replies
811
views
Yeast Tiling Array BPMAP
Yeast
Yeast
17.7 years ago
iromashk@student.umass.edu
▴ 30
0
votes
3
replies
1.3k
views
trouble using GCRMA
Yeast
cdf
gcrma
Yeast
cdf
gcrma
updated 17.7 years ago by
Zhijin Jean Wu
▴ 200 • written 17.7 years ago by
wong
▴ 10
0
votes
1
reply
1.9k
views
create an new AnnotatedDataFrame
Survival
Yeast
Biobase
genefilter
tkWidgets
marray
convert
arrayMagic
affyio
Survival
updated 17.5 years ago by
Martin Morgan
25k • written 17.5 years ago by
Yad Ghavi-Helm
▴ 30
0
votes
1
reply
3.6k
views
RE : create an new AnnotatedDataFrame
Annotation
Survival
Yeast
Biobase
genefilter
tkWidgets
marray
convert
arrayMagic
affyio
updated 17.5 years ago by
Martin Morgan
25k • written 17.5 years ago by
Yad Ghavi-Helm
▴ 30
0
votes
1
reply
997
views
Microarray data with outliers
Yeast
Yeast
updated 17.3 years ago by
Sean Davis
21k • written 17.3 years ago by
JUAN MIGUEL MARIN DIAZARAQUE
▴ 70
0
votes
5
replies
1.8k
views
KEGG & hyperGTest: an example?
Annotation
Yeast
Organism
Annotation
Yeast
Organism
updated 17.3 years ago by
Seth Falcon
▴ 150 • written 17.3 years ago by
Paul Shannon
★ 1.1k
0
votes
10
replies
1.8k
views
how to build a GOstats-compatible annotation package for plasmodium falciparum?
Annotation
Yeast
GOstats
Annotation
Yeast
GOstats
updated 17.3 years ago by
Dave Berger
▴ 30 • written 17.3 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
1.0k
views
made4, memory issues
Network
Clustering
Cancer
Yeast
made4
Network
Clustering
Cancer
Yeast
made4
17.3 years ago
Aedin Culhane
▴ 510
0
votes
0
replies
1.9k
views
Median-Interquartile Normalization
Microarray
SystemsBiology
Annotation
GO
Preprocessing
Clustering
Cancer
Yeast
Organism
GO
17.3 years ago
McGee, Monnie
▴ 300
0
votes
2
replies
1.3k
views
Probe pairs location on chips // ANOVA
Yeast
ygs98
probe
affy
Yeast
ygs98
probe
affy
updated 22.8 years ago by
Byron Ellis
▴ 280 • written 22.8 years ago by
julien.sylvestre@wotan.ens.fr
▴ 50
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Comment: How to formulate 2 factor nested design in DESeq2
by
Mariane
• 0
Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Votes
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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