Biostar Zinbwave

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714

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edgeR DESeq2 single-cell scRNAseq zinbwave

updated 21 months ago by Aaron Lun ★ 28k • written 21 months ago by vincent.croset ▴ 20

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965

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DESeq2 ZINB zinbwave deseq

updated 24 months ago by Michael Love 39k • written 24 months ago by rowcyclecamp • 0

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355

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zinbwave PCA

2.3 years ago Assa Yeroslaviz ★ 1.5k

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926

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scRNA zinbwave batch IntegratedData

updated 2.4 years ago by davide risso ▴ 920 • written 2.4 years ago by Assa Yeroslaviz ★ 1.5k

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709

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 2.6 years ago by Michael Love 39k • written 2.6 years ago by vincent.croset ▴ 20

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2.3k

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cmdscale zinbwave scRNA-seq single cell sequencing RNA-seq

updated 2.6 years ago by davide risso ▴ 920 • written 2.6 years ago by Wagaa ▴ 10

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1.6k

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zinbwave deseq2 vegan

updated 3.2 years ago by James W. MacDonald 62k • written 3.2 years ago by zcbthug • 0

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656

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deseq2 glm zinbwave ruvseq

updated 4.1 years ago by Michael Love 39k • written 4.1 years ago by Jakub ▴ 50

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Comment: pathview says my nonmodel species is unknown: "species invalid" by Guido Hooiveld ★ 3.5k

Does a restart of R help? Does a reinstall of the library `png` help? In a fresh R-session, what is the output from `BiocManager::valid()…

Comment: Don't let TopGo to trimm long GO names by James W. MacDonald 62k

Did you not notice that this has been answered *as part of this thread that you posted in?*

Comment: pathview says my nonmodel species is unknown: "species invalid" by nute11a • 0

Hi Luo, thank you so much for your helpful comment. While I was able to get this to work and visualize my interesting KEGG pathways (yay!) …

Comment: Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA) by Wolfgang Huber 13k

Hi Ben, your first step should be to upgrade to the current versions of R and Bioconductor. There is really little point in trouble-shooti…

Answer: Is ther an annotation package for sheep (Ovis aries) by Guido Hooiveld ★ 3.5k

Yes, there is! An `EnsDb` for sheep can be obtained through the so-called `AnnotationHub`. See James' and my posts in the thread linked t…

Votes

FDR and padj in deseq and edger

Comment: Mutect version, matched normal and manual curation in PureCN

Answer: Is ther an annotation package for sheep (Ovis aries)

Is ther an annotation package for sheep (Ovis aries)

Awards • All

Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k