User: Anthony Rossini

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Posts by Anthony Rossini

<prev • 53 results • page 1 of 6 • next >
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Answer: A: Re: Try to run a lots of chips: 32 bits vs 64 bits
... Nicholas Lewin-Koh writes: > Another alternative might be to try using Tony Rossini's lib PVM > interface if you have access to multiple processors on a network. Though > setting up libpvm for that is a bitch. Actually, it's much, much better now for configuration. Paper done soon (like ...
written 14.7 years ago by Anthony Rossini530
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Answer: A: heatmap
... "Liaw, Andy" writes: > The wisdom of looking at such a thing aside, has anyone implemented > `heatmap' in R? (That's the one where the data matrix is shown in a color > image, with dendrograms on the top and left sides of it indicating the > clustering of rows and columns.) > > ...
written 14.8 years ago by Anthony Rossini530
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Answer: A: PCA plots
... If you can get the SJava interface, you can do linked plots, brushing, and grand tours on scatterplots (i.e. principle components). The ROrca interface works pretty well these days, I just need more time to clean up the docs. best, -tony >>>>> "LG" == Laurent Gautier writes: ...
written 14.8 years ago by Anthony Rossini530
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Answer: A: Phylogenetic inference
... APE might be the best. I've got some work mid-completion that has a slightly different set of tools, but it isn't done yet. >>>>> "susan" == Susan Holmes writes: susan> Dear Kjetil, susan> I have done alot of phylogeny studies using susan> phylip that I interf ...
written 14.8 years ago by Anthony Rossini530
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Answer: A: AnnBuild of u133b?
... >>>>> "johannes" == Johannes Hüsing writes: johannes> Dear list fellows, johannes> I am trying to get an entry to the AnnBuilder package but I am overwhelmed johannes> by the multitude of functions offered. Has anybody written a AnnBuilder- johannes> HOWT ...
written 14.9 years ago by Anthony Rossini530
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Answer: A: CDF file package for the Drosophila Affy chip
... >>>>> "terry" == Terry Gaasterland writes: terry> Hello, terry> The Drosophila chip CDF file package is missing from the CDF terry> data page at: terry> http://www.bioconductor.org/data/cdfenvs/cdfenvs.html terry> All of the other chips that w ...
written 15.0 years ago by Anthony Rossini530
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Comment: C: important bug fix in the package affy
... >>>>> "gregory" == Gregory R Warnes writes: gregory> Also, which released version, 1.0 or 1.1? IE, how far back is did the bug gregory> go? 1.1. I don't know how far back, though. gregory> -Greg >> -----Original Message----- >> From: Isa ...
written 15.0 years ago by Anthony Rossini530
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Answer: A: Installing Biocondutor under Debian r
... >>>>> "johannes" == Johannes Husig writes: johannes> Cheers, johannes> after installing Bioconductor on my Debian system I was johannes> surprised to see that the new files were installed in johannes> the /usr/lib/R tree. johannes> Under Debian, t ...
written 15.0 years ago by Anthony Rossini530
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Comment: C: (no subject)
... >>>>> "anna" == Anna Gustafsson writes: anna> I desperately seek to find the version 2 of the Affy package for R as anna> described in the Vignette "textual description of affy" by November anna> 12th 2002 and in the article "Exploration, Normalization and ...
written 15.0 years ago by Anthony Rossini530
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Answer: A: affy 2.0
... >>>>> "lisa" == Lisa A McGraw writes: lisa> Is it possible to download affy version 2.0 from the internet? I've lisa> noticed the documentation for this version is available, but the most lisa> recent version I've found is 1.1. Could you please direct me to w ...
written 15.0 years ago by Anthony Rossini530

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