User: cirisarri95

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Posts by cirisarri95

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How to get diff expresion results from sam files
... I already got 9 .sam files from alignments from programs other than bioconductor. What can I use for getting the results about differential gene expression? All the packages use already processed data, or they already got the counts matrices so I don't know what to use for, first of all getting the ...
differential gene expression sam written 3.1 years ago by cirisarri950 • updated 3.1 years ago by Aaron Lun23k
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Functions of DESeq2 package
... Hi all, Regarding the package DESeq2, -What are the input files? BAM/SAM files? -Does it makes the counting and the differential expression analysis, or just the latter? Thank you. Regards, Carlos ...
deseq2 differential gene expression rna-seq written 3.1 years ago by cirisarri950 • updated 3.1 years ago by Steve Lianoglou12k
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Comment: C: Programs used in RNA-seq workflow
... Hi, Then, if I want to run the whole package workflow, do I need to first run STAR read aligner? Or will it be runned with the rest of the package? Thanks. ...
written 3.1 years ago by cirisarri950
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Answer: A: Programs used in RNA-seq workflow
... Hi, Thanks for your help.  Also, for running this workflow, is it set up so that I input data once and it runs the whole process with no more help? Or should I be inputting for each step the data again and again? ...
written 3.1 years ago by cirisarri950
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Programs used in RNA-seq workflow
... Good morning everyone,  I was interested in knowing which programs is the bioconductor package RNA-seq workflow: gene exploratory analysis and differential expression for: -Quality control -Mapping -Counting -Read Analysis Thanks everyone! Regards ...

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