User: Amitha Sampath

Reputation:
10
Status:
New User
Location:
India
Last seen:
1 year, 11 months ago
Joined:
2 years, 5 months ago
Email:
a*********@gmail.com

Posts by Amitha Sampath

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Comment: C: ChIPQC on samples without peaks and wrong total reads
... Thanks Tom! I will try with the new version in that case :-)  ...
written 2.0 years ago by Amitha Sampath10
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ChIPQC on samples without peaks and wrong total reads
... I am trying to use ChIPQC on a set of bam files only (without peaks). I am using the version ChIPQC 1.8.3. So, I created a sample sheet with the bam file and no peak file. I am currently facing 2 issues in generating a ChIPQCreport. 1. I am unable to generate a html report for the experiment (error ...
chipqc written 2.0 years ago by Amitha Sampath10 • updated 24 months ago by Thomas Carroll400
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Differential binding using csaw
... Hi, I currently working with the package csaw to analyze differentially bound sites. Everything works fine until "estimateDisp". Please can someone help me identify the cause of the error. library(csaw) library(limma) library(edgeR) all <- list.files(pattern="^H3K27me3_.*.bam$") bam.files <- ...
chipseq differential expression differential gene expression csaw differential binding analysis written 2.5 years ago by Amitha Sampath10 • updated 2.5 years ago by Aaron Lun21k

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