User: ugwu.nelson

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ugwu.nelson10
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Posts by ugwu.nelson

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Answer: A: Allele Specific Expression Using edgeR
... Thanks for the prompt and detailed response! I have two different alleles because we crossed two different inbred mouse strains and collected RNA from their F1 for RNA-Seq. Some of these F1s have a mutation in one copy of a gene (HET) while others do not (WT). I should have stated this earlier. I ...
written 3.3 years ago by ugwu.nelson10
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Allele Specific Expression Using edgeR
... I have 2 samples each in two genotype groups: wild-type (WT) and heterozygous (HET). And for each gene per sample, I have obtained the raw read counts for two alleles (allele 1 and allele 2) sample      genotype   allele individual 1    WT    allele 1 count individual 1    WT    allele 2 count i ...
edger allelicimbalance written 3.3 years ago by ugwu.nelson10

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