User: amab424

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amab4240
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Posts by amab424

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DESeq2 "unmix" function
... Hi all,   I'm trying to figure out the options of the new DESeq2 function "unmix". In my case, I have normalized gene counts for : primary breast tumor, ovarian metastasis, and normal ovary of the same individual. The "unmix" function is: unmix(x, pure, alpha, shift, loss = 1, quiet = FALSE) ap ...
rnaseq deseq2 written 2.3 years ago by amab4240 • updated 2.3 years ago by Michael Love25k
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Answer: A: baySeq pairedData error
... I tried this example data: library(baySeq) data(pairData) pairCD <- new("pairedData", data = pairData[,1:4], pairData =                 pairData[,5:8],replicates = c(1,1,2,2),groups = list(NDE = c(1,1,1,1),  DE = c(1,1,2,2))) ...
written 3.3 years ago by amab4240
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Answer: A: baySeq pairedData error
... Thanks Tom, I'm not sure if the version what's causing the problem. I'm using baySeq_2.5.5 ...
written 3.3 years ago by amab4240
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baySeq pairedData error
... I'm trying to run baySeq but I'm getting this error: Error in getClass(Class, where = topenv(parent.frame())) :    “pairedData” is not a defined class   Can someone help me with that.   Thanks ...
bayseq written 3.3 years ago by amab4240 • updated 3.3 years ago by Thomas J Hardcastle180

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