User: bastien.chevreux

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Posts by bastien.chevreux

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Comment: C: Using edgeR with "traditional" coverage data?
... The idea being to transform a "average coverage" (==average gene expression) value back to something I do not have atm (well, read counts) but which edgeR needs. I'll give it a try. ...
written 3.3 years ago by bastien.chevreux0
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Comment: C: Using edgeR with "traditional" coverage data?
... As a follow-up: if edgeR does not take read length into account, one can use it with any read-length, right? So how about using - as read counts - the total number of bases of those parts of fragments which are covering a gene? This would be equivalent to the number of 1-base reads which mapped to e ...
written 3.3 years ago by bastien.chevreux0
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Using edgeR with "traditional" coverage data?
... Hi there, for a number of reasons my RNASeq mapping pipeline has been built to generate somewhat more "traditional" coverage data and not read counts as result of the mapping. The net effect is that I am able to generate a number which is equivalent to "average transcript copy number per given amou ...
rnaseq coverage edger written 3.4 years ago by bastien.chevreux0 • updated 3.4 years ago by Ryan C. Thompson7.4k

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