User: mcastrod

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mcastrod0
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Posts by mcastrod

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Answer: A: Minfi read.metharray error in checkslotassignment
... Hi, Did you find a solution for this issue? I got the same error after upgrading R to 3.4.3 and minfi to 1.28. I tried with older versions and I have the same error with EPIC and 450k arrays. The only strange thing is two missing file link warnings during minfi installation but there was no error.  ...
written 19 months ago by mcastrod0
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Answer: A: error using EPIC early access version arrays with minfi
... Thank you Kasper, We will try to rescan the arrays as you said. We will also send you today an idat file example. Best, Manuel   ...
written 3.3 years ago by mcastrod0
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error using EPIC early access version arrays with minfi
... Dear all, We are having some problems with the analysis of some EPIC methylation arrays (early access version) with minfi package. These arrays contains less cpgs than the current arrays so the annotation files are different. When we tried to load the arrays with read.metharray function we get the ...
minfi software error epic read.metharray written 3.3 years ago by mcastrod0
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error with ELMER package
... Dear All, I was trying to use ELMER package with some different TCGA tumor types in order to study enhancers. I had no problems with the test example (LUSC), but when I use another TCGA cancer type (GBM) with the default pipeline TCGA.pipe I get the following error: Error in (function (mee, probes ...
software error elmer written 3.4 years ago by mcastrod0 • updated 3.4 years ago by lijingya0

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