User: Vitalina Komashko

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Last seen:
6 months, 1 week ago
Joined:
14 years, 11 months ago
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v*******@gmail.com

Posts by Vitalina Komashko

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Comment: A: Package annotate and org.Hs.eg.db: can't look up ENTREZ by ENSEMBL gene
... Thank you, James! You are right, this does work: ``` > lookUp("ENSG00000121410", "org.Hs.eg", "ENSEMBL2EG") $ENSG00000121410 [1] "1" ``` but I thought that I was supposed to use the string from the package, like here: `org.Hs.egENSEMBL`, so I would take "ENSEMBL"... Anyways, not arguing! :) I ...
written 6 months ago by Vitalina Komashko10
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Package annotate and org.Hs.eg.db: can't look up ENTREZ by ENSEMBL gene
... It seems to me that using `annotate::lookUp` used to work for mapping ENSEMBL genes to ENTREZ IDs. I used to use it in the following way: > annotate::lookUp("ENSG00000121410", data = "org.Hs.eg", what = "ENSEMBL") However, it seems that it doesn't work anymore for me even though the mapping is ...
annotation written 6 months ago by Vitalina Komashko10
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Problems with packages: annaffy, GO, KEGG, golubEsets
... Hello All! I'm running R-2.0.1 and I tried to download and install annaffy, KEGG, GO, golubEsets packages, but it seems to be a problem. Here is an exact mesage: Loading required package: reposTools [1] TRUE Error in library(package, character.only = TRUE, logical = TRUE, warn.conflicts = warn.conf ...
go edd annaffy affyplm written 14.9 years ago by Vitalina Komashko10 • updated 14.9 years ago by rgentleman5.5k

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