User: Edoardo Saccenti

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Posts by Edoardo Saccenti

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Answer: A: PhD position available in Florence, Italy, for metabolomcs studies
... A three--years Ph.D. student position is available in the group of metabolomic of the FiorGen Foundation in Florence (www.fiorgen.net). The research facility is located @ CERM Center of Magnetic Resonance of the University of Florence (http://www.cerm.unifi.it/home/). The Ph.D. is in the frame of T ...
written 10.4 years ago by Edoardo Saccenti130
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PhD position available in Florence, Italy, for metabolomcs studies
... A three?years Ph.D. student position is available in the group of metabolomic of the FiorGen Foundation in Florence (www.fiorgen.net). The research facility is located @ CERM Center of Magnetic Resonance of the University of Florence (http://www.cerm.unifi.it/home/). The Ph.D. is in the frame of Th ...
written 10.5 years ago by Edoardo Saccenti130
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managing GEO soft files
... Dear Friends does exist a BioC package to work on GEO soft files? I would to get expression data and other infos from this file. This should be a nice thing before starting to write a parser to do that.... Any of you had occasion to manage soft files?? Thanks you -- "Raffiniert ist der Herr Gott, ...
pharmacogenomics written 13.8 years ago by Edoardo Saccenti130
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after filtering
... How can I obtain the genes "survived" to a filtering procedure? I do: mygenes <- genfilter(exprs(allgenes), filter) where filter is a general filterfunction I can check the number of survived genes by sum(mygenes) but how get names and relative expression data?? Thanks Edoardo ...
pharmacogenomics written 13.9 years ago by Edoardo Saccenti130
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problem with siggenes
... I would like to manage a FDR analysis via SAM as implemented in siggenes package. First I read 2 file.CEL into an affybatch object called "mydata" Then i used rma routine to correct my data obtaining an exprSet object called "myeset" According to the guide I need to pass to sam the data (myeset in ...
pharmacogenomics siggenes written 13.9 years ago by Edoardo Saccenti130 • updated 13.9 years ago by Holger Schwender900
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affymetrix chip type
... Loading some .cel files via R affy package I get the following warning: ------> Cel file "filename" does not seem to be of HG-U133A type I konw that this file is of HG-U133B type and not of A one. In such a way can I make it recognised? What is the right library to download? I'm working under ...
pharmacogenomics affy written 13.9 years ago by Edoardo Saccenti130 • updated 13.9 years ago by James W. MacDonald48k
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fixed problem with libxml
... I had library installed.... i just updated and it worked fine! greetings edoardo -- "Raffiniert ist der Herr Gott, aber boshaft ist Er nicht." --- Dr. Edoardo Saccenti FiorGen Pharmacogenomics Foundation CERM Nuclear Magnetic Resonace Research Center Scientific Pole - University of Florence Via ...
pharmacogenomics written 13.9 years ago by Edoardo Saccenti130
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persistent errors
... Trying to install XML package as many of you have kindly told me, i get others error: is the first time I experience such a lot of problems.... maybe a not well done R installation?? or simply a dependencies problem? > install.packages2("XML") Note: You did not specify a download type. Using a ...
pharmacogenomics written 13.9 years ago by Edoardo Saccenti130
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XML Package
... I'have downloaded AnnBuider package but cheking dependencies I found it lays on XML package. Infact, when invoking library(AnnBuilder) I get: library(AnnBuilder) Loading required package: XML Error: package 'XML' could not be loaded In addition: Warning message: There is no package called 'XML' in ...
pharmacogenomics written 13.9 years ago by Edoardo Saccenti130 • updated 13.9 years ago by Tomas Radivoyevitch70
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Comment: C: GEO soft files
... On Tuesday 28 December 2004 12:49, you wrote: Thanks a lot, I will give a look! Ed > Edoardo, > > The package AnnBuilder has functions for downloading GEO data directly > from the web (queryGEO). > > Sean > > On Dec 28, 2004, at 6:41 AM, Edoardo Saccenti wrote: > > Does ...
written 13.9 years ago by Edoardo Saccenti130

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