User: smithng1215

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smithng121520
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Posts by smithng1215

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Comment: C: Trouble with Tximport
... Yes that worked. Thank you very much for your help! I had a feeling it was going to be something small like that. ...
written 19 months ago by smithng121520
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Comment: C: Trouble with Tximport
... Oh sorry about that, I changed the name when I was playing with it trying to fix it. But no it is not. I have double checked just to make sure I am using the tx2gene file without the decimal.  Good catch though! ...
written 19 months ago by smithng121520
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Trouble with Tximport
... I am trying to use tximport on my read counts from salmon to condense the ensemble transcript ID counts to gene ID counts.  This is what Ive tried: library(GenomicFeatures) txdb <- makeTxDbFromGFF("/path/gencode.v24.primary_assembly.annotation.gtf") k <- keys(txdb, keytype = "GENEID") df &l ...
salmon tximport written 19 months ago by smithng121520 • updated 19 months ago by Michael Love14k

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