Admin: shepherl

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shepherl ♦♦ 620
Reputation:
620
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United States
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1 day, 8 hours ago
Joined:
2 years, 1 month ago
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l************@roswellpark.org

Posts by shepherl

<prev • 141 results • page 2 of 15 • next >
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Answer: A: Is there any way to write my mutation dataframe to vcf file?
... Unfortunately there is no easy way to do this. Your best bet is to look at the vcf constructors in VariantAnnotation package. You could coerace your data.frame into a vcf object using the constructors and then use the write.vcf function. ...
written 5 weeks ago by shepherl ♦♦ 620
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Comment: C: rice annotation package
... Is this what you mean riceprobe ?  ...
written 5 weeks ago by shepherl ♦♦ 620
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Comment: C: Support for BSgenomeViews objects in matchPWM
... You might consider opening an issue for this on the github issues page for this package Biostrings. ...
written 5 weeks ago by shepherl ♦♦ 620
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Comment: C: How to read in PacBio .bam.pbi file
... I don't know if they reading for .bam.pbi but have you looked at Rsamtools or bamsignals that provide reading in of bam files. ...
written 5 weeks ago by shepherl ♦♦ 620
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Comment: C: Illumina Methylation Manifest Install
... Can you please provide the output from: .libPaths() biocLite("IlluminaHumanMethylation450kmanifest") Is your desired installation directory found in the results from .libPaths()? Is this a shared computer (in a lab) or a personal computer? ...
written 7 weeks ago by shepherl ♦♦ 620
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Comment: C: Why can't I download Bioconductor????
... What Operating System are you on?   When you say trying to download Bioconductor -  could you please include the commands you are trying to run with any output that is displayed?  ...
written 7 weeks ago by shepherl ♦♦ 620
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Comment: C: Illumina Methylation Manifest Install
... Hello, What OS are you using? Could you share your sessionInfo() Are you using an R installation that was installed by root? Even though you moved the tar.gz file you would still have to install the package for R to find it. You can see what directories R is trying to install the package to .l ...
written 7 weeks ago by shepherl ♦♦ 620
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Answer: A: Bioconductor 3.7 is released
... The workflow links are now fixed and the release BiocViews page is now active.  ...
written 7 weeks ago by shepherl ♦♦ 620
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Comment: C: Bioconductor 3.7 is released
... We are working on the issue with the workflows but thank you for bringing it to our attention.  ...
written 7 weeks ago by shepherl ♦♦ 620
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News: DEADLINE: commits to Bioc 3.7
... The Bioconductor Release is occurring next week!  The last day to commit changes to the devel branch of 3.7 before we branch to RELEASE_3_7 is Sunday April 29th.     Please keep in mind - last minute pushes will likely not be checked with a daily build and could potentially have ERROR's in both rel ...
news bioconductor package updates packages release written 8 weeks ago by shepherl ♦♦ 620

Latest awards to shepherl

Scholar 12 months ago, created an answer that has been accepted. For A: MSstats package update
Centurion 12 months ago, created 100 posts.
Appreciated 12 months ago, created a post with more than 5 votes. For DOI for packages
Commentator 12 months ago, created a comment with at least 3 up-votes. For C: Bioconductor packages now each have a DOI.
Scholar 12 months ago, created an answer that has been accepted. For A: survcomp package - censor missing
Scholar 2.2 years ago, created an answer that has been accepted. For A: survcomp package - censor missing
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: survcomp package - censor missing

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