User: cookm346

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cookm3460
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Posts by cookm346

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Using Limma for analyzing proteomics data
... I have seen many researchers use (and instruct on how to use) Limma for analyzing genomics data. What are the changes that need to be made to the way Limma is used for analyzing Proteomics data?   Thank you so much. ...
proteomics limma written 17 months ago by cookm3460 • updated 17 months ago by Laurent Gatto840
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Limma LogFC hand calculation
... I know this question has been asked before, but even reading through older posts I cannot replicate the LogFC output in R.   design <- cbind(Grp1=1,Grp2vs1=c(0,0,0,1,1,1)) data <- 1:6 fit <- lmFit(data, design) fit <- eBayes(fit) topTable(fit, coef=2)   I get a LogFC of 3. Can you p ...
limma logfc written 18 months ago by cookm3460 • updated 18 months ago by Aaron Lun17k

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