User: cookm346

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cookm3460
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Posts by cookm346

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Using Limma for analyzing proteomics data
... I have seen many researchers use (and instruct on how to use) Limma for analyzing genomics data. What are the changes that need to be made to the way Limma is used for analyzing Proteomics data?   Thank you so much. ...
proteomics limma written 2.1 years ago by cookm3460 • updated 2.1 years ago by Laurent Gatto980
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Limma LogFC hand calculation
... I know this question has been asked before, but even reading through older posts I cannot replicate the LogFC output in R.   design <- cbind(Grp1=1,Grp2vs1=c(0,0,0,1,1,1)) data <- 1:6 fit <- lmFit(data, design) fit <- eBayes(fit) topTable(fit, coef=2)   I get a LogFC of 3. Can you p ...
limma logfc written 2.2 years ago by cookm3460 • updated 2.2 years ago by Aaron Lun20k

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