User: Dan Staines

gravatar for Dan Staines
Dan Staines70
Reputation:
70
Status:
Trusted
Location:
EMBL-EBI
Website:
http://www.ebi.ac.uk/
Last seen:
1 year, 1 month ago
Joined:
1 year, 6 months ago
Email:
d*******@ebi.ac.uk

Coordinator Genomics Technology Infrastructure Group

Ensembl/Ensembl GenomesEMBL-EBI

Posts by Dan Staines

<prev • 16 results • page 1 of 2 • next >
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Comment: C: BiomaRt: Query ERROR (database error)
... OK, hopefully the problems we've had on our mirrors should be resolved now. Please do let me know if not, and preferably any errors and your rough geographical location. Thanks for your patience! Dan. ...
written 14 months ago by Dan Staines70
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Comment: C: BiomaRt: Query ERROR (database error)
... the error message suggests its a mirror site that you've been directed to, and would guess useast. I'll pass this on to the folks who look after the mirrors - thanks for your patience... ...
written 14 months ago by Dan Staines70
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Answer: A: BiomaRt: Query ERROR (database error)
... can I ask what part of the world you're connecting from? ...
written 14 months ago by Dan Staines70
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Comment: C: biomaRt not working anymore
... Yes, everything does seem fine right now though we're investigating to see if there was a problem yesterday. Will let you know what we find out.  ...
written 14 months ago by Dan Staines70
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Comment: C: Ensembl biomaRt connection errors
... It looks like our Asia biomart mirror is currently down. We'll look into restarting this ASAP. Other problems may reflect excessive load on the BioMart servers, particularly by queries using very large numbers of regions or IDs. We're currently investigating how we might handle this. ...
written 17 months ago by Dan Staines70
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Answer: A: Ensembl biomaRt connection errors
... Sorry to hear you're having problems! Can you confirm when you see this problem, and if its a continual problem or intermittent? Many thanks, Dan. ...
written 17 months ago by Dan Staines70
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Comment: C: biomaRt not working?
... There appears to be a problem with our Asian mirror which we're looking at right now. In the meantime, the main site and other mirrors (uswest and useast) appear to be working fine. ...
written 17 months ago by Dan Staines70
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Comment: C: biomaRt - getBM - biomart= ENSEMBL_MART_FUNCGEN !!! NOT WORKING!!!
... So, to confirm - this was working 7 days ago (9th June), but wasn't working yesterday? Can you be more specific with the time of day when it wasn't working? Also, if you've changed location and it stops working I'd strongly suggest looking at your local proxy setup. Thanks, Dan. ...
written 17 months ago by Dan Staines70
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Comment: C: biomaRt - getBM - biomart= ENSEMBL_MART_FUNCGEN !!! NOT WORKING!!!
... I'm going to look into a fix at my end, but it might not be possible for at least a few days. In the meantime, the queries do work, but are slower than is ideal - one region query of this kind takes about 20-30s, but will complete without biomaRt timing out. Therefore, you could modify your script t ...
written 17 months ago by Dan Staines70
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Comment: C: biomaRt - getBM - biomart= ENSEMBL_MART_FUNCGEN !!! NOT WORKING!!!
... Does each query use just one region, or multiple regions at once? ...
written 17 months ago by Dan Staines70

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