User: nschurch

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nschurch10
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Posts by nschurch

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Comment: C: tximport error reading salmon quantification files...
... sure, here it is: > source("https://bioconductor.org/biocLite.R") Bioconductor version 3.2 (BiocInstaller 1.20.3), ?biocLite for help > biocLite("tximport") BioC_mirror: https://bioconductor.org Using Bioconductor 3.2 (BiocInstaller 1.20.3), R 3.3.1 (2016-06-21). Installing package(s) ‘tximpo ...
written 8 months ago by nschurch10
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tximport error reading salmon quantification files...
... I'm trying to use tximport with salmon quantifications. Initially I had some problems installing tximport because of the version of R (3.3.1) and bioconductor (3.2) installed on our Rstudio server so (while I wait for the guys who maintain that to fix it) I figured I'd install it directly from the b ...
salmon tximport written 8 months ago by nschurch10 • updated 8 months ago by James W. MacDonald45k
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Comment: C: Overriding of shrinkage in DESeq2
... Hi Nik, As Mike says, there was an error in the original early-access publication of our paper that lead to incorrect FPR results for DESeq2. Thanks for Mike, the bug was quickly spotted and corrected and the final publication version (which he has already linked to) correctly shows the DESeq2 perf ...
written 18 months ago by nschurch10

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