User: lattalic

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lattalic0
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Posts by lattalic

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Comment: C: Running Roast with Gene Symbols of Curated Genes
... Thanks, I figured that was the issue was I'm not super confident with this stuff yet. I really appreciate your help and that command line you provided.  ...
written 17 months ago by lattalic0
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Running Roast with Gene Symbols of Curated Genes
... I am running gene set analysis on curated gene sets from the MSigDB. I was successfully able to run roast using the following coding library("edgeR") summarized.counts <- read.table("C:/Users/Alicia/Documents/summarized.counts.matrix", row.names=1, header=TRUE, sep="\t") design_two<-model.ma ...
edger gene set analysis roast gene set mroast written 17 months ago by lattalic0 • updated 17 months ago by James W. MacDonald45k
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Answer: A: ROAST using curated gene sets
... I apologize, I realize I wasn't making any sense. When I originally ran roast I created a list of GO gene sets I was interested in. This was what I was doing on the line importgene<- c("...."). Originally those had GO IDs, however I changed them to see if it was possible to run curated gene sets ...
written 17 months ago by lattalic0
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ROAST using curated gene sets
... This is probably a simple fix but I am trying to run roast using curated gene sets from the MSigDB. I have been able to run roast successfully in the past using GO gene sets but am struggling to use these other type of gene sets.   I am getting an error message when I try to create the list of gen ...
edger roast mroast written 17 months ago by lattalic0

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