User: t3h096

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t3h0960
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Posts by t3h096

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Issue with edgeR
... When I try to run this portion of code i receive the error: > colnames( counts ) <- paste(c(rep("Gene.ID",1),rep("Reads.Count",1)),sep=",") # sample names Error in `colnames<-`(`*tmp*`, value = c("Gene.ID", "Reads.Count")) :    'names' attribute [2] must be the same length as the vector [0 ...
edger software error columns written 3.5 years ago by t3h0960 • updated 3.5 years ago by Gordon Smyth39k
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Answer: A: edgeR installation issue
... Thank You this solve the issue. ...
written 3.5 years ago by t3h0960
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Comment: C: edgeR installation issue
... Part 3 with session info: ERROR: compilation failed for package ‘edgeR’ * removing ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/edgeR’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/edgeR’ The downloaded source packages are in     ‘/private/ ...
written 3.5 years ago by t3h0960
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Comment: C: edgeR installation issue
... Here is the rest of the message:  * installing *source* package ‘edgeR’ ... ** libs g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c R_compute_nbdev.cpp -o R_compute_nbdev.o g++ -arch x86_64 -I/Library/Frameworks/R ...
written 3.5 years ago by t3h0960
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Comment: C: edgeR installation issue
...   I tried to install it from the link you provided and i got this:  > source('https://bioconductor.org/biocLite.R') Error in file(filename, "r", encoding = encoding) :    https:// URLs are not supported > biocLite("edgeR", type="binary") BioC_mirror: http://bioconductor.org Using Bioconducto ...
written 3.5 years ago by t3h0960
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edgeR installation issue
... When i try to install the edgeR package i receive the error :   ld: warning: directory not found for option '-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64' ld: warning: directory not found for option '-L/usr/local/lib/x86_64' ld: warning: directory not found for option '-L/usr/local/lib/gcc ...
edger software error written 3.5 years ago by t3h0960

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Popular Question 3.5 years ago, created a question with more than 1,000 views. For edgeR installation issue

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