User: slbattle

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slbattle10
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Posts by slbattle

<prev • 3 results • page 1 of 1 • next >
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Answer: A: methylPipe meth.call issue with sorted SAM file
... Hi, Is there anyway methylPipe can accept a sorted bam? Or do you have any suggestions for creating the sort sam that methylPipe will accept. Thanks again for your help.  SB ...
written 17 months ago by slbattle10
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Answer: A: methylPipe meth.call issue with sorted SAM file
... Thank you for your quick reply. See my error message below:   Extracting methylation information from input SAM files and creating output files for each sample... sam_type not specified Error in FUN(X[[i]], ...) :  Error in methylation calling...                 Check if it is a sorted Bismark ...
written 17 months ago by slbattle10
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methylPipe meth.call issue with sorted SAM file
... Hello, I am having an issue with meth.call recognizing my Bismark sam file. I sorted it using samtools. Can you suggest the best way to create the sorted Bismark sam file so that meth.call can read it?  Thank you, SB ...
methylpipe written 17 months ago by slbattle10 • updated 8 months ago by kamal.fartiyal8410

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