User: Byron Ellis

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Byron Ellis280
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Posts by Byron Ellis

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Comment: C: Problem installing graph package
... Subscribing to the Mac SIG mailing list might also be a good idea, it can be really useful when g77 goes weird on you. Oh, and the repository version of Ruuid doesn't require glib on OS X (sort of a heavy requirement for something like 5 typedefs), you might try building that version instead. On O ...
written 13.1 years ago by Byron Ellis280
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Rgraphviz install issues
... That reminds me, right about the time CVS went away, I needed to reinstall Ruuid and whipped up a quick patch to get it to build under OS X without installing glib (because I'm too lazy to install glib). Basically, do the same thing as Win32. Seems to work swimmingly. Sorry about the bad diff, but, ...
ruuid rgraphviz written 13.2 years ago by Byron Ellis280 • updated 13.2 years ago by Andrew Beckerman30
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Comment: C: heatmap colours
... It was originally done to mimic the Cy3/Cy5 labels. Everybody else used it because thats what the software did and there wasn't any way to change it. Personally I like Blue->White->Red as fully saturated Blue and Red have roughly the same apparent brightness (as opposed to Blue->White-> ...
written 14.5 years ago by Byron Ellis280
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Answer: A: Installing bioconductor under MacOsx
... As others have said, you don't have write access.... Set your R_LIBS in your .tcshrc (or .bash_profile if you're a bash user). I like setenv R_LIBS /Users//Library/R using bash: export R_LIBS=/Users//Library/R This puts user installed packages (including Bioconductor---it works fine on my iBook) i ...
written 14.6 years ago by Byron Ellis280
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HClust/Heapmap weirdness?
... Hi folks, so I have this dataset and generating the heatmap is giving me some really weird outliers (e.g. a cluster that with high expression in one group and sort of middling in the rest is picking up genes with very low expression in the same group and middling in the rest of the groups). Is there ...
written 14.6 years ago by Byron Ellis280
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Comment: C: Automation Server for R?
... It's a particular type of COM Server... very similar (nearly identical in fact) to ActiveX controls, except that the control (in this case an entire application) tends to run out-of-process (as opposed to in-process as is the case with ActiveX). I suppose if someone was really desperate they could r ...
written 14.7 years ago by Byron Ellis280
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Answer: A: Question
... I'm not certain of the details for VirtualPC (IIRC you can just drag the .CEL files from your VirtualPC server to your OS X boxen) but there are no general problems using .CEL files on your OS X box (I use Bioconductor on my iBook for instance). The format is presently ASCII based (similar to a Wind ...
written 14.7 years ago by Byron Ellis280
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Comment: C: bioconductor help
... On Tuesday, March 11, 2003, at 10:29 AM, Vincent Carey 525-2265 wrote: > >> Dear there: >> >> I'm trying to install the bioconductor packages into R in Windows. >> >> 1. I downloaded the packages and the getBioC.R into the libary folder >> of R. > > th ...
written 14.7 years ago by Byron Ellis280
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e coli CDF file?
... Hi guys, does anyone have the Affymetrix E Coli CDF file around (or alternatively the dChip .bin file for the CDF file)? We're doing a lab on the low level expression index generation and I'd luck to have students run a small experiment using both Bioconductor and dChip in the lab using some e coli ...
cdf written 14.7 years ago by Byron Ellis280
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Comment: C: Fwd: installing Bioconductor in R
... The other alternative might be to download Jan de Leeuw's Mac OS X R installation from http://gifi.stat.pub.ucla.edu/pub which contains, among some 200-ish other packages, Bioconductor 1.1 On Wednesday, February 19, 2003, at 04:46 PM, Jeff Gentry wrote: >> Hi, I have installed R and being u ...
written 14.8 years ago by Byron Ellis280

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