User: Jenn

gravatar for Jenn
Jenn20
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20
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New User
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Last seen:
3 months, 3 weeks ago
Joined:
1 year, 4 months ago
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h***************@gmail.com

Posts by Jenn

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Scater normalizeExprs() batch effect
... I have a question about how to write the design matrix for normalizeExprs(). Do I include only the uninteresting variables/factors that I wanted to control for in the design matrix or should I also include the condition that I am interested in seeing the effect? design=model.matrix(~batch) example ...
batch effect scater written 3 months ago by Jenn20 • updated 3 months ago by Aaron Lun17k
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Comment: C: SC3 tutorial error
... It's working now. Thank you! ...
written 12 months ago by Jenn20
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SC3 tutorial error
... I tried to run the SC3 tutorial in section 3.1 and 3.2 (http://bioconductor.org/packages/release/bioc/vignettes/SC3/inst/doc/my-vignette.html) but I kept getting this error with this line treutlein_sceset <- sc3(treutlein_sceset, ks = 2:4) Setting SC3 parameters... Error in object@sc3$exprs_v ...
sc3 written 12 months ago by Jenn20 • updated 12 months ago by Vladimir Kiselev120

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