User: solo7773

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solo777310
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Posts by solo7773

<prev • 7 results • page 1 of 1 • next >
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Tutorial: doParallel foreach already exporting variable(s)
... According to my use of doParallel, I share my experience here. refGenome = BSgenome.Hsapiens.UCSC.hg19::BSgenome.Hsapiens.UCSC.hg19 # start parallel   library(doParallel)   nCPUcores = detectCores()   if (nCPUcores < 3) {     registerDoSEQ()   }else{     cl = makeCluster(nCPUcores - 1)     regi ...
export tutorial foreach doparallel written 4 months ago by solo777310
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Comment: C: motifMatrix input object type, confused VRange and GRange
... Thanks Julian. It works right. ...
written 11 months ago by solo777310
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motifMatrix input object type, confused VRange and GRange
... motif-functions {SomaticSignatures} Usage motifMatrix(vr, group = "sampleNames", normalize = TRUE) Arguments vr     GRanges object [required]   But, the example from the manual shows Examples data(sca_motifs_tiny) motifMatrix(sca_motifs_tiny, group = "study")   However, sca_motifs is a VRa ...
somaticsignatures written 11 months ago by solo777310 • updated 11 months ago by Julian Gehring1.2k
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Comment: C: makeVRangesFromGRanges throws coercing "factor" to "NA" error
... Dear Martin Morgan, thank you very much. It works now. ...
written 11 months ago by solo777310
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Comment: A: makeVRangesFromGRanges throws coercing "factor" to "NA" error
... Can any body give me some advice? ...
written 11 months ago by solo777310
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Comment: C: Sequence Context of Somatic Variants
... Hi, I am also using your SomaticSignatures, but I cannot transfer your example GRange data to VRange format.Posted question is at https://support.bioconductor.org/p/84585/ can you help me to solve this problem? Thanks ...
written 11 months ago by solo777310
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makeVRangesFromGRanges throws coercing "factor" to "NA" error
... Dear all, When I use makeVRangesFromGRanges (R package VariantAnnotation), I got the following error, Error in as(mcols(gr)[, i], type[i]) : no method or default for coercing "factor" to "NA" My operations shown below > library(SomaticSignatures) > data(ov_tcga, package = "SomaticCancerA ...
variantannotation somaticsignatures r packages written 11 months ago by solo777310 • updated 11 months ago by Martin Morgan ♦♦ 20k

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