User: David ROUX

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David ROUX10
Reputation:
10
Status:
New User
Location:
France (Avignon University)
Last seen:
6 months, 3 weeks ago
Joined:
3 years, 1 month ago
Email:
d*********@univ-avignon.fr

Posts by David ROUX

<prev • 12 results • page 2 of 2 • next >
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Answer: A: edger, trended or common dispersion
... In my case, if I use "estimateDisp" instead of the other functions I get  : "Error in locfitByCol(loglik, covariate, span = span, degree = 0) : locfit required but is not available" And, I still do not realy know how to interpret the plot. I really like the funny sentence of Aaron : "a nice d ...
written 3.1 years ago by David ROUX10
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Answer: A: Filtering of RNA-seq data in EdgeR
... Hello, I have quite exactly the same question, but I did "cpm" instead of  "aveLogCPM", according to the official book p11 : keep <- rowSums(cpm(y)>1) >= 3 y <- y[keep, , keep.lib.sizes=FALSE] I put "3" due to my 3 replicats per conditions. By doing this I go from 60 000 to 20 000 ...
written 3.1 years ago by David ROUX10

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