User: Andreas Paul

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Posts by Andreas Paul

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Comment: C: Discrepanices between minifi dmp finder and lmfit
... I think I got it now and understand the main differences between the dmpfinder and limma. But still wondering if I can perform pairwise comparisons such as 1-2, 2-3, 3-1? Do I need to create a contrast matrix or does setting the coefficients in toptable works as well? Further I want to add age and e ...
written 3.3 years ago by Andreas Paul0
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Discrepanices between minifi dmp finder and lmfit
... Dear all, currently Im working on methylation analysis of Illumina 450k beadchip data using the minfi workflow for identifying differentially methylated CpG sites. The design consist of 55 samples and we have different groups of covariates and one group for example has 3 levels. When applying dmp f ...
limma minfi illimina 450k methylation written 3.3 years ago by Andreas Paul0
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Answer: A: limma for 450K methylation array data
... Thank you very much! This helps as it is really well explained! Thank you again! ...
written 3.3 years ago by Andreas Paul0
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limma for 450K methylation array data
... Dear all, we want to use the limma package for the analysis of methylation data from the 450K Illumina array for continuous traits. We have 50 samples which were processed on the 450k array. The design only consist cases without any controls. We have more than 5 covariates we want to include into t ...
limma minfi written 3.3 years ago by Andreas Paul0

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