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Posts by sumneuron
... Hello, I have two covariates in addition to condition, let's call them A and B. So I set the design as formula(~ A + B + condition) and I contrast on the level of condition. Contrast can only distinguish between two factors (e.g WT v KO, single-read v paired-end). What if my covariate "B" has four ...
... Hello, I think the limma guide is pretty good... however, I don't really understand from it how to get very rough data into shape (and what shape is needed) for processing a single channel. For example, I have very simple experiment, I have two replicates of WT and a treatment. I essentially have f ...
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