User: sumneuron

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sumneuron0
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Posts by sumneuron

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DESeq2 1.6 Multifactorial Design: Covariates with more than two classes?
... Hello, I have two covariates in addition to condition, let's call them A and B. So I set the design as formula(~ A + B + condition) and I contrast on the level of condition. Contrast can only distinguish between two factors (e.g WT v KO, single-read v paired-end). What if my covariate "B" has four ...
deseq2 multiple factor design multifactorial design written 3.2 years ago by sumneuron0 • updated 3.2 years ago by Michael Love25k
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How to analyze single channel extremely raw data with LIMMA
... Hello, I think the limma guide is pretty good... however, I don't really understand from it how to get very rough data into shape (and what shape is needed) for processing a single channel. For example, I have very simple experiment, I have two replicates of WT and a treatment. I essentially have f ...
microarray limma single channel written 3.3 years ago by sumneuron0 • updated 3.3 years ago by Ryan C. Thompson7.4k

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