User: damian.kao

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damian.kao0
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Posts by damian.kao

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Comment: C: Chip-seq analysis with input
... Thanks. I am trying to understand what you meant when you wrote: However, this becomes problematic when changes in chromatin state (that affect input coverage) coincide with changes in binding.... Are you saying that for a given genomic region that has signal in the input control, that signal is ...
written 15 months ago by damian.kao0
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Chip-seq analysis with input
... I read through the other posts about using RNA-seq packages to analyze Chip-seq data (https://support.bioconductor.org/p/72098/). It seems like the general consensus is to just ignore the input control samples or build a black-list and look at differential binding between IP samples. If I do want t ...
chip-seq differential binding analysis written 15 months ago by damian.kao0 • updated 15 months ago by Aaron Lun17k

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