User: rea

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rea0
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Posts by rea

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retrieve genes from mroast in limma
... Do you know how to retrieve the genes corresponding to the proportions of up-/down-regulated genes reported in the mroast() output withinthe limma package? Documentation mentions thresholds on z. However, how could you compute the mentioned z?   ...
limma written 11 months ago by rea0 • updated 11 months ago by Gordon Smyth32k
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dexseq_count.py in shell script
... To use DEXSeq,which is the effective way to execute the Python dexseq_count.py script in a shell script without receiving errors such as 'import.im6: unable to open X server `' @ error/import.c/ImportImageCommand/368'? Thank you foe any suggestion. ...
py written 13 months ago by rea0
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interaction formulas without replicates
... I refer to section 3.3.2 on nested interaction formulas in the edgeR user guide. I wonder if the coefficient TreatDrug.Time.1h provides the logFC and associated FDR corresponding to (drug.1h-drug.0h)-(placebo.1h-placebo.0h). Is this interpretation correct? Does it make sense to use nested interact ...
cancer written 13 months ago by rea0 • updated 13 months ago by Aaron Lun17k

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