User: rea

gravatar for rea
rea • 10
Reputation:
10
Status:
New User
Location:
Last seen:
1 year, 9 months ago
Joined:
3 years, 3 months ago
Email:
a********@unitn.it

Posts by rea

<prev • 7 results • page 1 of 1 • next >
1
vote
2
answers
682
views
2
answers
Answer: A: Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
... I couldn't understand the first proposal of solution. I solved the problem by updating R to the latest version by following the instructions at https://cran.r-project.org/bin/linux/ubuntu and by installing the Bioconductor package.       ...
written 21 months ago by rea • 10
0
votes
2
answers
682
views
2
answers
Answer: A: Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
... What is the effect of R --vanilla -e "BiocInstaller::biocLite("BiocGenerics") It does not seem to open an R session. What should I type in? source("https://bioconductor.org/biocLite.R") biocLite("BiocGenerics")   or source("https://bioconductor.org/biocLite.R") biocLite("BiocUpgrade")   ...
written 21 months ago by rea • 10
0
votes
2
answers
682
views
2
answers
Comment: C: Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
... Here's the output installing *source* package ‘BiocGenerics’ ... ** R ** inst ** preparing package for lazy loading Creating a new generic function for ‘append’ in package ‘BiocGenerics’ Creating a new generic function for ‘as.data.frame’ in package ‘BiocGenerics’ Creating a new generic function f ...
written 21 months ago by rea • 10
1
vote
2
answers
682
views
2
answers
Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
... Dear All, I am unable to update package BiocGenerics which is required to install BSgenome. I tried: source("https://bioconductor.org/biocLite.R") biocLite("BiocGenerics") and got the following error message: BioC_mirror: https://bioconductor.org Using Bioconductor 3.6 (BiocInstaller 1.28.0), ...
biocgenerics written 21 months ago by rea • 10
0
votes
1
answer
317
views
1
answer
retrieve genes from mroast in limma
... Do you know how to retrieve the genes corresponding to the proportions of up-/down-regulated genes reported in the mroast() output withinthe limma package? Documentation mentions thresholds on z. However, how could you compute the mentioned z?   ...
limma written 2.9 years ago by rea • 10 • updated 2.9 years ago by Gordon Smyth ♦ 39k
0
votes
0
answers
440
views
0
answers
dexseq_count.py in shell script
... To use DEXSeq,which is the effective way to execute the Python dexseq_count.py script in a shell script without receiving errors such as 'import.im6: unable to open X server `' @ error/import.c/ImportImageCommand/368'? Thank you foe any suggestion. ...
py written 3.1 years ago by rea • 10
0
votes
1
answer
510
views
1
answer
interaction formulas without replicates
... I refer to section 3.3.2 on nested interaction formulas in the edgeR user guide. I wonder if the coefficient TreatDrug.Time.1h provides the logFC and associated FDR corresponding to (drug.1h-drug.0h)-(placebo.1h-placebo.0h). Is this interpretation correct? Does it make sense to use nested interact ...
cancer written 3.1 years ago by rea • 10 • updated 3.1 years ago by Aaron Lun • 25k

Latest awards to rea

No awards yet. Soon to come :-)
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 246 users visited in the last hour