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Posts by longwoodSequencer
... Thank you Ryan and Michael for your quick responses. I see how negative values are possible in the transformation but that's easier to deal with since that can be interpreted as '<1'. I am bummed about the positive values though. I've uploaded images with an example of this and also a comparison ...
... I'm using the rlog function in the DESeq2 package and I notice a quirk in the transformed data that I do not know what to make of: for genes that are expressed in a small proportion of samples (say, for gene X, 10 samples have non-zero raw counts out of 300 samples), the transformed dataset has no z ...
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