User: mdeea123

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mdeea12310
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Posts by mdeea123

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Extract GRanges for gene data frame
... I have a set of genes with associated data that I want to locate on the mouse genome My approach is to extract the genes in the genome subset the genes to include only my list add the extra data for my list into the GRanges as metadata export the relevant parts of the GRanges object. Mouse ...
grange written 3.2 years ago by mdeea12310 • updated 3.2 years ago by Martin Morgan ♦♦ 24k
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Comment: C: Subsetting GRanges based on metadata
... Thanks heaps.  Mitchell ...
written 3.2 years ago by mdeea12310
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Subsetting GRanges based on metadata
... I'm trying to subset a GRanges object to extract only the 1000 genes I'm interested in I’ve just extracted the transcription start sites for mm10 head(tssgr) GRanges object with 6 ranges and 1 metadata column: seqnames ranges strand | GENEID < ...
granges metadata subsetting written 3.2 years ago by mdeea12310 • updated 3.2 years ago by Michael Lawrence11k

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