User: cabezasdelafuented

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Posts by cabezasdelafuented

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Comment: C: custom annotation for GO enrichment
... I want to remove certain genes from the annotation to see if the signal I have is due to specific genes or it's all the group that is involved ...
written 2.2 years ago by cabezasdelafuented10
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custom annotation for GO enrichment
... I'm trying to create a custom annotation for Human genes using the package annotationForge and then run an enrichment analysis using the package clusterProfiler. I am able to construct the necessary data frames for the function makeOrgPackage() retrieving the information from the Homo.sapiens packag ...
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Pathview & topGO
... Hello, I'm using my results of a Differential Gene Expression from RNAseq data using DESeq2 as input data for both Pathview and topGO. I manage to get similar results for both but I am interested to know if i can use the results from one package as the input to the other (e.g. use the GO obtained ...
go topgo pathview R written 3.2 years ago by cabezasdelafuented10 • updated 3.1 years ago by Luo Weijun1.5k

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