User: 2323982403

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232398240310
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Posts by 2323982403

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WGCNA multiple data sets overlapping analysis
... I was analyzing three data sets using wgcna independently.  Each data set gave me several modules and I want to see their overlapping. With the help of the tutorial "Consensus-RelateToFemMods", I could modify some code to generate a overlapping heatmap containing the overlapped counts and p values. ...
wgcna overlap multiple data sets written 6 months ago by 232398240310 • updated 6 months ago by Peter Langfelder1.3k
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WGCNA export to cytoscape
...     I'm using the exportNetworkToCytoscape function to export the module of interest to cytoscape. The tutorial first calculate TOM, select node in the network, choosing a threshold of the edge and then export to cytoscape. An edge can exists when the weight between two nodes is above the threshold. ...
wgcna cytoscape written 6 months ago by 232398240310 • updated 6 months ago by Peter Langfelder1.3k
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WGCNA with paired samples
... Dear all, I'm analyzing microarray data using wgcna. I have 36 paired samples from 18 persons.Each person has two samples, one before a 6 week endurance training program,and one after the training program. We're investigating the exercise effects on gene expression using wgcna. We want to find modu ...
wgcna paired samples exercise written 15 months ago by 232398240310 • updated 15 months ago by Peter Langfelder1.3k

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