User: oswaldo.lorenzo

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Posts by oswaldo.lorenzo

<prev • 18 results • page 1 of 2 • next >
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Comment: C: Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() fun
... Dear Michael, I'll have a look at the `plotRangesLinkedToData()` to see if I can get what I'm trying to do. Anyway, what do you mean by using a more modular approach? Can I import the data in a different way that would make the plot easier to generate? Thank you very much for your help ...
written 9 months ago by oswaldo.lorenzo10
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Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
... Hello, Basically, what I'm trying to do is to plot the linkage disequilibrium (LD) in a certain genomic region in a similar way as this website does: https://analysistools.nci.nih.gov/LDlink/?tab=ldmatrix. The problem is that the figure from this website has a low quality and I need the figure for ...
ggbio bioconductor plot ggplot2 tracks written 9 months ago by oswaldo.lorenzo10 • updated 9 months ago by Michael Lawrence9.8k
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Comment: C: ggbio tracks () does not allow "call" class in the "main" slot of the function
... Thank you, That was my fault. I wasn't converting the bquote function into an expression in the right way. This will work for me like this. Best, Oswaldo ...
written 10 months ago by oswaldo.lorenzo10
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Comment: C: ggbio tracks () does not allow "call" class in the "main" slot of the function
... Dear Michael Lawrence, This was my first guess, that turning the bquote(...)) into an expression(bquote(..)) object would work. The problem I get with this approach is that instead of getting the real gene name into the output plot title, I get the following character string: "bquote(Variation in ...
written 10 months ago by oswaldo.lorenzo10
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ggbio tracks () does not allow "call" class in the "main" slot of the function
... Hello, The change Michael Lawrence made a few months ago on the tracks() to allow italics in the plot titles works well if you work with expression class objects, but I found an additional issue. I need to generate several plots and instead of writing each gene name manually, I would like to parse ...
ggbio plot ggplot2 call written 10 months ago by oswaldo.lorenzo10 • updated 10 months ago by Michael Lawrence9.8k
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Comment: C: tracks () function from ggbio does not allow italic expression in the title
... Dear Michael Lawrence, I posted this comment as a new question. It was really long. Thanks, Oswaldo ...
written 10 months ago by oswaldo.lorenzo10
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Comment: C: tracks () function from ggbio does not allow italic expression in the title
... This issue was solved by Michael Lawrence in ggbio 1.21.6 version. Thanks ...
written 13 months ago by oswaldo.lorenzo10
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tracks () function from ggbio does not allow italic expression in the title
... I'm trying to combine plain text with italic text in the title of a combined tracks() plot generated by ggbio, but I can not include the part of the title that I want in italic fonts. Here you have several examples of titles that allow italics using expression(italic(x)) and the last one is the one ...
ggbio ggplot2 title typography written 14 months ago by oswaldo.lorenzo10
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Comment: C: Missing levels in legend using autoplot () + scale_color_manual () functions
... This question was answered by aosmith in the following link: http://stackoverflow.com/questions/39535088/missing-levels-in-legend-using-autoplot-scale-color-manual-functions. ...
written 14 months ago by oswaldo.lorenzo10
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Missing levels in legend using autoplot () + scale_color_manual () functions
... Hello, I'm trying to plot three different bed files (one with SNP data, another one with deletions and a third one with duplication data), but I cannot manage the legend to contain the values of the three layers unless I put the data altogether in the same file. The problem about combining the thre ...
ggbio bioconductor ggplot2 legend karyiogram written 14 months ago by oswaldo.lorenzo10

Latest awards to oswaldo.lorenzo

Scholar 14 months ago, created an answer that has been accepted. For A: ggbio tracks() function handling x axis in the wrong way
Scholar 14 months ago, created an answer that has been accepted. For A: How to show chromosome position and SNP label at the same time in x axis

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