User: relathman

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relathman0
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Posts by relathman

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segfault when trying to convert hta20_Hs_ENSE_22.cdf to binary format
... Hi, I want to convert a HTA 2.0 CDF file in ASCII format to binary using affxparser::convertCdf() but run into repeated problems. I have been trying this for hta20_Hs_ENSE_22.cdf (released on Jun 21, 2017) as well as for hta20_hs_ENSE_21.cdf (released on Nov 28, 2016) and the respective ENSG fil ...
cdf affxparser hta2.0 written 2.2 years ago by relathman0
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How to deal with Affymetrix GeneChip probeids that map to multiple genes
... I am currently working with HTA 2.0 chips (GeneChip® Human Transcriptome Array 2.0). After normalization of the data with RMA, I get 70523 features which I need to annotate for the downstream analysis that includes differential expression and gene enrichment steps. I would like to assign only one ki ...
annotation annotationdbi pd.hta.2.0 hta20sttranscriptcluster.db probe mapping written 2.9 years ago by relathman0 • updated 2.9 years ago by James W. MacDonald50k

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